View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1958_low_19 (Length: 238)
Name: NF1958_low_19
Description: NF1958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1958_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 21372100 - 21371880
Alignment:
| Q |
1 |
cttgaaagaattgaactcaattgattaattgtgttgtggttccaatgacacaaactaacctttgtgaacttgtctttagcaacattacccttcttctgta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21372100 |
cttgaaagaattgaactcaattgattaattgtgctgtggttccaatgatacaaactaacctttgtgaacttgtctttagcaacattacccttcttctgta |
21372001 |
T |
|
| Q |
101 |
aggcagcaaggttaccatcaggtaaatcttggcctaatgttaagaccataatacccatgataacatgcaaccaaccagggataaaaaaggcaattctcca |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21372000 |
aggcaccaaggttaccatcaggtaaatcttggcctaatgttaagaccataatacccatgataacatgcaaccaaccagggataaaaaaggcaattctcca |
21371901 |
T |
|
| Q |
201 |
agcagtgaaaggagtagcacc |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
21371900 |
agcagtgaaaggagtagcacc |
21371880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 21385457 - 21385677
Alignment:
| Q |
1 |
cttgaaagaattgaactcaattgattaattgtgttgtggttccaatgacacaaactaacctttgtgaacttgtctttagcaacattacccttcttctgta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21385457 |
cttgaaagaattgaactcaattgattaattgtgctgtggttccaatgatacaaactaacctttgtgaacttgtctttagcaacattacccttcttctgta |
21385556 |
T |
|
| Q |
101 |
aggcagcaaggttaccatcaggtaaatcttggcctaatgttaagaccataatacccatgataacatgcaaccaaccagggataaaaaaggcaattctcca |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21385557 |
aggcaccaaggttaccatcaggtaaatcttggcctaatgttaagaccataatacccatgataacatgcaaccaaccagggataaaaaaggcaattctcca |
21385656 |
T |
|
| Q |
201 |
agcagtgaaaggagtagcacc |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
21385657 |
agcagtgaaaggagtagcacc |
21385677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University