View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1958_low_2 (Length: 506)
Name: NF1958_low_2
Description: NF1958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1958_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 3e-71; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 14 - 201
Target Start/End: Complemental strand, 6017235 - 6017037
Alignment:
| Q |
14 |
cacaatcgatatttaaatcatctatctctatctctttataatatacacacaatgctcacaaaaattgaaacattttgccaatcacacaatagacacctag |
113 |
Q |
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| T |
6017235 |
cacaatcgatatttaaatcatctatctctatctctctgtaatatacacacaatgctcacgaaaattgaaacattttgccagtcacactatagacacctag |
6017136 |
T |
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| Q |
114 |
caaatctcatcttcatgttgtgttcgttcacacatgataattaccacacgat-----------caacatgcatgtagataaatcggatcaatacaaata |
201 |
Q |
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| T |
6017135 |
caaatctcatcttcatgttgtgttcgttcacacatgataattaccacacgatagttgaacttacaacatgcatatagataaatcggatcaatacaaata |
6017037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 407 - 497
Target Start/End: Complemental strand, 6016716 - 6016626
Alignment:
| Q |
407 |
tgatcaaaataattgttcaaatttccggttcatcaaaataacattaaaattaacatgaaattttacaattttcatctagaactagaattat |
497 |
Q |
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| T |
6016716 |
tgatcaaaataattgttcaaatttccagttcatcaaaataacattaaaattaacatgatattttataatttttatctagaactagaattat |
6016626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 275 - 342
Target Start/End: Complemental strand, 6016847 - 6016780
Alignment:
| Q |
275 |
aatttaacatgttggatggaaccatatttgtcatctatgtttgttagtaagacagtcattcacaaaat |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6016847 |
aatttaacatgttggatggaaccatatttgtcatctatgtttgttagtaagacagtcattcacaaaat |
6016780 |
T |
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