View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1958_low_3 (Length: 483)
Name: NF1958_low_3
Description: NF1958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1958_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 357
Target Start/End: Complemental strand, 20366346 - 20366008
Alignment:
| Q |
19 |
caaaaattaatcttaactctaaagaacatcaaacaaataatctaaacagggcatattatttttcctaatttcttctaaaacaataataataaaaagccta |
118 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20366346 |
caaaaattaatcttaactctaaacaacatcaaacaaataatctaaacagggcatattatttttcctaatttcttctaaaacaataataataaaaatccta |
20366247 |
T |
|
| Q |
119 |
aacccaatatattttatttcaccaacaccccagattatataagatcaacaacacttattggtagattcatctatattgaacaaagaaaaacacattaaan |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20366246 |
aacccaatatattttatttcaccaacaccccagattatataagatcaacaacacttattggtagattcatctatattgaacaaagaaaaacacattaaat |
20366147 |
T |
|
| Q |
219 |
nnnnnnaatacatccatacctatgatttgtagttttcagatctagtcttgatgttgtactctagagatctaagaagtatagatcaagagaagttgcaggt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20366146 |
ttttttaatacatccatacctatgatttgtagttttcagatctagtcttgatgtggtactctagagatctaagaagtatagatcaagagaagttgcaggt |
20366047 |
T |
|
| Q |
319 |
ccatcaccaaacttgaaggatgagtgaggaagataatga |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
20366046 |
ccatcaccaaacttgaaggatgagtgaggaagataatga |
20366008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 153 - 357
Target Start/End: Complemental strand, 50366803 - 50366599
Alignment:
| Q |
153 |
ttatataagatcaacaacacttattggtagattcatctatattgaacaaagaaaaacacattaaannnnnnnaatacatccatacctatgatttgtagtt |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
50366803 |
ttatataagatcaacaacacttattggtagattcatctatattgaacaaagaaaaacacattaaaaagtttcaatacattcatacctatgatttgtagtt |
50366704 |
T |
|
| Q |
253 |
ttcagatctagtcttgatgttgtactctagagatctaagaagtatagatcaagagaagttgcaggtccatcaccaaacttgaaggatgagtgaggaagat |
352 |
Q |
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||||||||| || ||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
50366703 |
ttcagatctggttttgatgtggtactgtagagatctaagaaggatagatcaagagaagttgcaggtccatcaccaaacttgaaggataagtgaggaagat |
50366604 |
T |
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| Q |
353 |
aatga |
357 |
Q |
| |
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||||| |
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| T |
50366603 |
aatga |
50366599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 50367160 - 50367022
Alignment:
| Q |
19 |
caaaaattaatcttaactctaaagaacatcaaacaaataatctaaacagggcatattatttttcctaatttcttctaaaacaataataataaaaagccta |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||| |||| | |||||||| ||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
50367160 |
caaaaattaatcttaactctaaacaacatcaaataaataatccaaacggttcatattatatttcctaatttcttctaaaacaataataatagaaagccta |
50367061 |
T |
|
| Q |
119 |
aacccaatatattttatttcaccaacaccccagattata |
157 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50367060 |
aacccaatatattttatttcaccaacaccccagattata |
50367022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 153 - 355
Target Start/End: Complemental strand, 24355921 - 24355714
Alignment:
| Q |
153 |
ttatataagatcaacaacacttattggtagattcatctatattgaacaaagaaaaa-cacattaaannnnnnna----atacatccatacctatgatttg |
247 |
Q |
| |
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||||||||||||||||||| |||||| |||||||||||||||||| | ||||||| ||||||||| | |||||||||||||||||||||| |
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| T |
24355921 |
ttatataagatcaacaacatttattgacagattcatctatattgaatagagaaaaaacacattaaaaagattgatttaatacatccatacctatgatttg |
24355822 |
T |
|
| Q |
248 |
tagttttcagatctagtcttgatgttgtactctagagatctaagaagtatagatcaagagaagttgcaggtccatcaccaaacttgaaggatgagtgagg |
347 |
Q |
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|||||| |||||||||||||||||| ||||| ||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
24355821 |
tagtttccagatctagtcttgatgtggtactgtagagatctaagaaggatatatcaagagaagtttcaggtccatcaccaaacttggaggatgagtgagg |
24355722 |
T |
|
| Q |
348 |
aagataat |
355 |
Q |
| |
|
|||||||| |
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|
| T |
24355721 |
aagataat |
24355714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 13782421 - 13782466
Alignment:
| Q |
20 |
aaaaattaatcttaactctaaagaacatcaaacaaataatctaaac |
65 |
Q |
| |
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|||||||||||||||| ||||| | ||||||||||||||||||||| |
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| T |
13782421 |
aaaaattaatcttaacgctaaacagcatcaaacaaataatctaaac |
13782466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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