View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1958_low_5 (Length: 399)
Name: NF1958_low_5
Description: NF1958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1958_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 13 - 383
Target Start/End: Complemental strand, 22422030 - 22421660
Alignment:
| Q |
13 |
gagatgaacgacagactgcaaagcgagaaagcaatgcgtgaagcgagagatgatctcaaccgtcggattcatgatcagaaaatggcgtcggagattttca |
112 |
Q |
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| T |
22422030 |
gagatgaacgacagattacaaagcgagagagcaatgcgtgaagcgagagacgatctcaaccgtcggattcatgatcagaaaatggcgtcggagattttca |
22421931 |
T |
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| Q |
113 |
acatgccggtggaggattgggataaatggggggataattttgagaaaccgtttggtgaagggagtttgtcgggttcgacgagtcggaacgatgatagtcc |
212 |
Q |
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||||||||||| ||||||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||| |||||| |||| |||| |
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| T |
22421930 |
acatgccggtgaaggattgggatgaatggggagataatttcgagaaaccgtttggtgaagggagttcttcgggttcgacgatgcggaacaatgaaggtcc |
22421831 |
T |
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| Q |
213 |
ggttgttagggtttattttaagggtttagtgagtgaggaggttgtgagaggtgagaatgtttctttggctgggattggtgttgctgtttgtgatgatgag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22421830 |
ggttgttagggtttattttaagggtttagtgagtgaggagagtgtgagaggtgagagtgtttctttggctgggattggtgttgctgtttgtgatgatgag |
22421731 |
T |
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| Q |
313 |
gataatttgatattggaaatttctaaggctgttgttgggaatgaaagtaggaaaattgttgtggagcttat |
383 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||||| ||| | ||||||| |||||||||||| |
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| T |
22421730 |
gataatttgatattggaaatttctaagactgttgatgggaatgagagtcgtaaaattgctgtggagcttat |
22421660 |
T |
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