View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19590_high_10 (Length: 423)
Name: NF19590_high_10
Description: NF19590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19590_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 102 - 406
Target Start/End: Complemental strand, 36634648 - 36634347
Alignment:
| Q |
102 |
tatgaatataccatttctagagtgaaaggagacaaacgggtcatctaaacaaatctttaacaaaacacaccaaaaactgataaatgatgatttcctaaaa |
201 |
Q |
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| T |
36634648 |
tatgaatataccatttctagagtgaaaggagacaaacgggtcatctaaacaaatctttaacaaaacacaccaaaaactgataaatgatgatttcctaaaa |
36634549 |
T |
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| Q |
202 |
tcataaaaagttagtcaaaatagagagaaagatnnnnnnnnnnnnnnnttgttattgtgaaaccaacctgattttgcattggatgagactttataatctg |
301 |
Q |
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| T |
36634548 |
tcataaaaagttagtcaaaatagagagaaagataaaaaaaaaaaa---ttgttattgtgaaaccaacctgattttgcattggatgagactctataatctg |
36634452 |
T |
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| Q |
302 |
atgaatcccacttatagcaacaattacccattataccaaaaatccaaatacagcttttcaagtttgcaatagctagctatctctgctttacaaacacccc |
401 |
Q |
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| T |
36634451 |
atgaatcccacttatagcaacaattacccattataccaaaaatccaaatacagcttttcaagtttgcaatagctagctatctctgctttacaaacacccc |
36634352 |
T |
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| Q |
402 |
attat |
406 |
Q |
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| T |
36634351 |
attat |
36634347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 36634737 - 36634694
Alignment:
| Q |
15 |
aatatgaaagacttaacaataatatccatcaaagatagtatatt |
58 |
Q |
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| T |
36634737 |
aataagaaagacttaacaataatatccatcaaagatagtatatt |
36634694 |
T |
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