View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19590_high_23 (Length: 267)
Name: NF19590_high_23
Description: NF19590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19590_high_23 |
 | |
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| [»] scaffold0759 (1 HSPs) |
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| [»] scaffold0112 (3 HSPs) |
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| [»] scaffold0416 (1 HSPs) |
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| [»] scaffold0093 (1 HSPs) |
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| [»] scaffold0233 (1 HSPs) |
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Alignment Details
Target: scaffold0759 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0759
Description:
Target: scaffold0759; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 2186 - 2397
Alignment:
| Q |
1 |
ttaatgaaaaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagatatgtgtattggatccaactttaact |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||| |
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|
| T |
2186 |
ttaatgaaaaattagtatactacatgctcaatttaataccaaacattcctaaatatatacgttatatgcatag--atgtgtatcggttccaactttaact |
2283 |
T |
|
| Q |
101 |
tcctttgccatttgcagtaatcatccagacgaagaacgttgaagcaaggcaatatttgagttgtgcaagctacggtatgggttgttcaatatttgagaag |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| || |||| || |||||||||||||||| | |
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|
| T |
2284 |
tcctttgccatttgtagtaatcatccagacgaagaacgttgaagcaaggca---------ttgtgcaagatatggtagggattgttcaatatttgagtcg |
2374 |
T |
|
| Q |
201 |
attccatgcggcaactccataac |
223 |
Q |
| |
|
| ||||||||||||||||||||| |
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|
| T |
2375 |
aatccatgcggcaactccataac |
2397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 26105 - 25892
Alignment:
| Q |
1 |
ttaatgaaaaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagatatgtgtattggatccaactttaact |
100 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||| |
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|
| T |
26105 |
ttaatgaaaaattggtttagtacatgcttaatttaataccaaacattcctaaatatgtacgttatatgcatagat--gtgtattggttccaactttaact |
26008 |
T |
|
| Q |
101 |
tcctttgccatttgcagtaatcatccagacgaagaacgttgaagcaaggcaatatttgagttgtgcaagctacggtatgggttgttcaatatttgagaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||||||| | |
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| T |
26007 |
tcctttgccatttgcagtaatcatccagacgaagaacgttgaagc------ata------ttgtgcaagatacggtatgcgttgttcaatatttgagttg |
25920 |
T |
|
| Q |
201 |
attccatgcggcaactccataacgtgtc |
228 |
Q |
| |
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| |||||||||||||||||||||||||| |
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|
| T |
25919 |
aatccatgcggcaactccataacgtgtc |
25892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 41243 - 41101
Alignment:
| Q |
9 |
aaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagatatgtgtattggatccaactttaacttcctttgc |
108 |
Q |
| |
|
|||||| | |||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||| |
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|
| T |
41243 |
aaattaatatactacatgctcaatttaataccaaactttcctaaatatatacgttatatgcatag--atgtgtattggtttcaactttaacttcctttgc |
41146 |
T |
|
| Q |
109 |
catttgcagtaatcatccagacgaagaacgttgaagcaaggcaat |
153 |
Q |
| |
|
||||||||||||| | |||| ||||||||||||||| |||||| |
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|
| T |
41145 |
catttgcagtaattgttcagattaagaacgttgaagcagggcaat |
41101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 17337 - 17285
Alignment:
| Q |
94 |
tttaacttcctttgccatttgcagtaatcatccagacgaagaacgttgaagca |
146 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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|
| T |
17337 |
tttaacttcctttgccctttgcagtaatcattcagacgaagaacgttgaagca |
17285 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 26791997 - 26792219
Alignment:
| Q |
1 |
ttaatgaaaaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagatatgtgtattggatccaactttaact |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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|
| T |
26791997 |
ttaatgaaaaattagtatactacatgctcaatttaataccaaactttcctaaatatatacgttatatgcatagatatgtgtattggttccaactttaatt |
26792096 |
T |
|
| Q |
101 |
tcctttgccatttgcagtaatcatc----cagacgaagaacgttgaagcaaggcaatatttgagttgtgcaagctacggtatgggttgttcaatatttga |
196 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| || |||||| |||| || ||||||| |
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| T |
26792097 |
tcctttgccatttgcagtaatcatccagacagacgaagaacgttgaagcaaggca---------ttgtgcaagatatggtatgccttgtgcagtatttga |
26792187 |
T |
|
| Q |
197 |
gaagattccatgcggcaactccataacgtgtc |
228 |
Q |
| |
|
| || |||||||||||| ||||||||||||| |
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| T |
26792188 |
gtcgaatccatgcggcaattccataacgtgtc |
26792219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 7 - 144
Target Start/End: Original strand, 26834603 - 26834738
Alignment:
| Q |
7 |
aaaaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagatatgtgtattggatccaactttaacttccttt |
106 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||| |
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|
| T |
26834603 |
aaaaattagtatactacatgctcaatttaataccaaactttcctaaatatatacgttatatgcatag--atgtgtattggttccaactttaactttcttt |
26834700 |
T |
|
| Q |
107 |
gccatttgcagtaatcatccagacgaagaacgttgaag |
144 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |
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|
| T |
26834701 |
gccatttgcagtaatcgtccagacgaagaacgttgaag |
26834738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 26777909 - 26777766
Alignment:
| Q |
1 |
ttaatgaaaaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagatatgtgtattggatccaactttaact |
100 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||| | ||||||||||| |
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|
| T |
26777909 |
ttaatgaaaaattagtatactacattctcaatttaataccaaactctcctaaatatatacgttatatgcatagat--gtgtattggtttcaactttaact |
26777812 |
T |
|
| Q |
101 |
tcctttgccatttgcagtaatcatccagacgaagaacgttgaagca |
146 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
26777811 |
tcctttgccatttgcagtaatcgtccagacgaagaacgtagaagca |
26777766 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 26729406 - 26729547
Alignment:
| Q |
3 |
aatgaaaaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagatatgtgtattggatccaactttaacttc |
102 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| |||||| ||||||||||||| | |||||||||| ||| ||| | |||| ||||| ||||| ||| |
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|
| T |
26729406 |
aatgaaaaattaatatactacatgctcaatttaataccaaactttcctaaatatatgctttatatgcatggatgtgtat-ttggttccaattttaatttc |
26729504 |
T |
|
| Q |
103 |
ctttgccatttgcagtaatcatccagacgaagaacgttgaagc |
145 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||| |
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|
| T |
26729505 |
ctttgtcatttgcagtaatcgtccagacgaagaacgttgaagc |
26729547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 153
Target Start/End: Original strand, 26745629 - 26745688
Alignment:
| Q |
94 |
tttaacttcctttgccatttgcagtaatcatccagacgaagaacgttgaagcaaggcaat |
153 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||||| ||||| |||||| |
|
|
| T |
26745629 |
tttaacttcctttgccctttgcagtaatcgtccagacgaagaacgttcaagcagggcaat |
26745688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 26745586 - 26745627
Alignment:
| Q |
3 |
aatgaaaaattagtttactacatgctcaatttaatcccaaac |
44 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| |||||| |
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|
| T |
26745586 |
aatgaaaaattattatactacatgctcaatttaatgccaaac |
26745627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0416 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0416
Description:
Target: scaffold0416; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 7627 - 7475
Alignment:
| Q |
1 |
ttaatgaaaaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagatatgtgtattggatccaactttaact |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7627 |
ttaatgaaaaattagtatactacatgctcaatttaataccaaacattcctaaatatatacgttatatgcatagatatgtgtattggttccaactttaact |
7528 |
T |
|
| Q |
101 |
tcctttgccatttgcagtaatcatccagacgaagaacgttgaagcaaggcaat |
153 |
Q |
| |
|
|||||| |||||||||||||| |||||| ||||||||||||||| |||||| |
|
|
| T |
7527 |
tcctttaccatttgcagtaattgtccagattaagaacgttgaagcagggcaat |
7475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 4 - 150
Target Start/End: Original strand, 20949 - 21093
Alignment:
| Q |
4 |
atgaaaaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagatatgtgtattggatccaactttaacttcc |
103 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | |
|
|
| T |
20949 |
atgaaaaattagtatactacatgctcaatttaataccaaactttcctaaatatatacgttatatgcatagata--tgtattggttccaactttaactttc |
21046 |
T |
|
| Q |
104 |
tttgccatttgcagtaatcatccagacgaagaacgttgaagcaaggc |
150 |
Q |
| |
|
||||| ||||||||||||| || |||||| |||| |||||||||||| |
|
|
| T |
21047 |
tttgcaatttgcagtaatcgtcgagacgatgaacattgaagcaaggc |
21093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0233 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0233
Description:
Target: scaffold0233; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 17587 - 17691
Alignment:
| Q |
1 |
ttaatgaaaaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagatatgtgtattggatccaactttaact |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
17587 |
ttaatgaaaaattagtatactacatgctcaatttaataccaaactttcctaaatatatacgttatatgcatag--atgtgtattgattccaactttaact |
17684 |
T |
|
| Q |
101 |
tcctttg |
107 |
Q |
| |
|
||||||| |
|
|
| T |
17685 |
tcctttg |
17691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 54 - 151
Target Start/End: Complemental strand, 13042176 - 13042081
Alignment:
| Q |
54 |
tatatacgttatatgcatagatatgtgtattggatccaactttaacttcctttgccatttgcagtaatcatccagacgaagaacgttgaagcaaggca |
151 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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|
| T |
13042176 |
tatataggttatatgcatagat--gtgtattggttccaactttaacttcctttgccatttgcagtaatcgtccagatgaagaacgttgaagcaaggca |
13042081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 54 - 151
Target Start/End: Complemental strand, 13050253 - 13050158
Alignment:
| Q |
54 |
tatatacgttatatgcatagatatgtgtattggatccaactttaacttcctttgccatttgcagtaatcatccagacgaagaacgttgaagcaaggca |
151 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
13050253 |
tatataggttatatgcatagat--gtgtattggttccaactttaacttcctttgccatttgcagtaatcgtccagatgaagaacgttgaagcaaggca |
13050158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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