View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19590_high_26 (Length: 250)
Name: NF19590_high_26
Description: NF19590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19590_high_26 |
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| [»] chr3 (4 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 50905392 - 50905152
Alignment:
| Q |
10 |
aaaaatatgacaatccataaaagaaatttaatttaaatctagccatctcatttgacttccaagtgggtactctgctggcctttctttcaaatagtggggc |
109 |
Q |
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| T |
50905392 |
aaaaatatgacaatccataaaagaaatttaatttaaatctagccatctcatttgacttccaagtgggtactctgctggcctttctttcaaatagtggggc |
50905293 |
T |
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| Q |
110 |
ttattatatatgcactcttattgaacttgttgagccatgatttatggagagacatcaaaagacaataccatgtgttccctcatctcatggagcccatcct |
209 |
Q |
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| T |
50905292 |
ttattatatatgcactcttattgaacttgttgagccatgatttatggagagacatcaaaagacaataccatgtgttccctcatctcatggagcccatcct |
50905193 |
T |
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| Q |
210 |
ttaacaataatttaatttctcaaagaaatggatttgaagaa |
250 |
Q |
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| T |
50905192 |
ttaacaataatttaatttctcaaagaaatggatttgaagaa |
50905152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 38043476 - 38043566
Alignment:
| Q |
42 |
ttaaatctagccatctcatttgacttccaagtgggtactctgctggcctttctttcaaatagtggggcttattatatatgcactcttattga |
133 |
Q |
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| T |
38043476 |
ttaaacctagccatctcatttgacttccaagt-cgtaccctactgacctttcgttcagaagggggggcttactatatatgcactcttattga |
38043566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 48839141 - 48839101
Alignment:
| Q |
37 |
ttaatttaaatctagccatctcatttgacttccaagtgggt |
77 |
Q |
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| T |
48839141 |
ttaagttaaacctagccatctcatttgacttccaagtgggt |
48839101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 38043575 - 38043641
Alignment:
| Q |
156 |
gagagacatcaaaagacaataccatgtgttccctcatctcatggagcccatcctttaacaataattt |
222 |
Q |
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| T |
38043575 |
gagagacatccaaagacaataccatatgatctctaatctcatggaacccattcttcaacaatcattt |
38043641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 17970022 - 17970070
Alignment:
| Q |
197 |
tggagcccatcctttaacaataatttaatttctcaaagaaatggatttgaagaa |
250 |
Q |
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| T |
17970022 |
tggagcccatcatttaacaataattta-----tcaaagaaatggatttgaagaa |
17970070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 3073292 - 3073340
Alignment:
| Q |
197 |
tggagcccatcctttaacaataatttaatttctcaaagaaatggatttgaagaa |
250 |
Q |
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| T |
3073292 |
tggagcccatcatttaacaataattta-----tcaaagaaatggatttgaagaa |
3073340 |
T |
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