View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19590_high_29 (Length: 242)
Name: NF19590_high_29
Description: NF19590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19590_high_29 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 28608446 - 28608671
Alignment:
| Q |
1 |
gctgtaggggttattagcctcattgaatctttcaatgccactagactttcccctatgcatatttttgcactttaccttgttgaactcgttggacgtgatg |
100 |
Q |
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| T |
28608446 |
gctgtaggggttattagcctcattgaatctttcaatgccactagactttcccctatgcatatttttgcactttaccttgttgaactcgttggacgtgatg |
28608545 |
T |
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| Q |
101 |
gtgcagttgttgcttctcatatggagaagcctagtggccaatctagaacacaaaatcttacgagatcccagatagagttagaaagtattgataataaatt |
200 |
Q |
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| T |
28608546 |
gtgcacttgttgcttctcatatggagaagcctagtggccaatctggaacacaaaatcttacaagatcccagatagagttagaaagtattgataataaatt |
28608645 |
T |
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| Q |
201 |
tgaagcactcagagaggcatatgatg |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
28608646 |
tgaagcactcagagaggcatatgatg |
28608671 |
T |
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Target: scaffold0002 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 4 - 226
Target Start/End: Complemental strand, 438455 - 438233
Alignment:
| Q |
4 |
gtaggggttattagcctcattgaatctttcaatgccactagactttcccctatgcatatttttgcactttaccttgttgaactcgttggacgtgatggtg |
103 |
Q |
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| T |
438455 |
gtaggagttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggcctttaccttgttgaaatcgttggacgtgttggtg |
438356 |
T |
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| Q |
104 |
cagttgttgcttctcatatggagaagcctagtggccaatctagaacacaaaatcttacgagatcccagatagagttagaaagtattgataataaatttga |
203 |
Q |
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| T |
438355 |
cccttgttgcttctcatatggaaaaatctagtggccaatctggaacacaaaatcttacacaatcccagctagagttagaaagcattaccaatacctttga |
438256 |
T |
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| Q |
204 |
agcactcagagaggcatatgatg |
226 |
Q |
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|||| ||| |||||||||||||| |
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| T |
438255 |
agcattcaaagaggcatatgatg |
438233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 13659822 - 13660042
Alignment:
| Q |
6 |
aggggttattagcctcattgaatctttcaatgccactagactttcccctatgcatatttttgcactttaccttgttgaactcgttggacgtgatggtgca |
105 |
Q |
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||||||||| |||||| |||||||||||||||| |||||| |||||||||| ||| |||| |||||||||||| |||||||| |||||| ||||||| |
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| T |
13659822 |
aggggttatcagcctcgttgaatctttcaatgctactagaatttcccctatacatgttttcgcactttaccttattgaactcaaaggacgtactggtgca |
13659921 |
T |
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| Q |
106 |
gttgttgcttctcatatggagaagcctagtggccaatctagaacacaaaatcttacgagatcccagatagagttagaaagtattgataataaatttgaag |
205 |
Q |
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||||||| |||||||||| ||||||||| |||| || || | ||||||||||| |||||||| ||||| |||||| ||| |||||| |||||||| |
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| T |
13659922 |
cttgttgccgctcatatggataagcctagtaaccaacctggagcgcaaaatcttacaagatcccaagtagagcaagaaagcattaataatacatttgaag |
13660021 |
T |
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| Q |
206 |
cactcagagaggcatatgatg |
226 |
Q |
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| T |
13660022 |
cacttggagaggcatatgatg |
13660042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 5 - 207
Target Start/End: Original strand, 13652321 - 13652523
Alignment:
| Q |
5 |
taggggttattagcctcattgaatctttcaatgccactagactttcccctatgcatatttttgcactttaccttgttgaactcgttggacgtgatggtgc |
104 |
Q |
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|||||||||| | ||||||| | |||||||||||||||||| |||||||||| ||| ||||| ||||||||||| |||||||| |||||| ||||| |
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| T |
13652321 |
taggggttatcaacctcattcagtctttcaatgccactagaatttcccctatacatgttttttcactttaccttattgaactcaaaggacgtaccggtgc |
13652420 |
T |
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| Q |
105 |
agttgttgcttctcatatggagaagcctagtggccaatctagaacacaaaatcttacgagatcccagatagagttagaaagtattgataataaatttgaa |
204 |
Q |
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| T |
13652421 |
acttgttgctgctcatatggataagcctagtgtgcaacctggagcacaaaatcttaccagttcccaggtagagcaagaaagcattaataatacatttgaa |
13652520 |
T |
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| Q |
205 |
gca |
207 |
Q |
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||| |
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| T |
13652521 |
gca |
13652523 |
T |
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