View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19590_high_5 (Length: 524)
Name: NF19590_high_5
Description: NF19590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19590_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 11 - 471
Target Start/End: Complemental strand, 4266867 - 4266407
Alignment:
| Q |
11 |
caaaggagtggttcatgcatctataaatactcaagacgctcaagcaagttttagatagacgtgagtaagaggttttatagaatgaaatgtctaccttttt |
110 |
Q |
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| T |
4266867 |
caaaggagtggttcatgcatctataaatactcaagacgctcaagcaagttttagatagacgtgagtaagaggttttatagaatgaaatatctaccttttt |
4266768 |
T |
|
| Q |
111 |
catggtacaaaggttcttttatagcaagagtttctagggaaatggatgaaaaatccattgaggtccttgagggatttgcgttgtgaccgattgatcaccc |
210 |
Q |
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| T |
4266767 |
catggtacaaaggttcttttagagcaagagtttctagggaaatggatgaaaaatccattgaggtccttgagggatttgcgttgtgaccgattgatcaccc |
4266668 |
T |
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| Q |
211 |
tttattttcattacatagtgattattaaggagtaatgcatgggttgggagactcaactatttgagttaagggttaagaagtttgaggttcatggttaagt |
310 |
Q |
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| T |
4266667 |
tttattttcattacatagtgattgttaaggagtaatgcatgggttgggagactcaactatttgagttaagggttaagaagtttgaggttcatggttaagt |
4266568 |
T |
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| Q |
311 |
tatgacaaaaactaacatattatcgtttattattaaaaagaaagaaagagcaatgcatgtttgtgcttgcggtgtagagcgtacattgcttgcaccttca |
410 |
Q |
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| T |
4266567 |
tatgacaaaaactaacatattatcgtttattattaaaaagaaagaaagagcaatgcatgtttgtgcctgcggtgtagagcgtacattgcttgcaccttca |
4266468 |
T |
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| Q |
411 |
tattagtccaatctaccaataattttacatgagtataatctattacctataatgatgagag |
471 |
Q |
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| T |
4266467 |
tattagtccaatctaccaataatcttacatgagtataatctattacctataatgatgagag |
4266407 |
T |
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