View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19590_high_9 (Length: 424)
Name: NF19590_high_9
Description: NF19590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19590_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 4961022 - 4960615
Alignment:
| Q |
1 |
attgggtgtgaatccaattgatgcacaaagagcaacattcaaagagtcaaatnnnnnnngattgcaaatgtttgtcctacatttaacaaaatatggattt |
100 |
Q |
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| T |
4961022 |
attgggtgtgaatccaattgatgcacaaagagcaacattcaaagagtgaaataaaaaaa-attgcaaatgtttgttctacatttaacaaaatatggattt |
4960924 |
T |
|
| Q |
101 |
atatcattttgagaaaatctctaaggtgacaggatgaaaagaggcatgagatatactagtgaagtatcatgatgatgaagacaaagttaagaaggtaaaa |
200 |
Q |
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| T |
4960923 |
atatcattttgagaaaatctctaaggtgacaggatgaaaagaggcatgagatatactagtgaagtatcatgatgatgaagacaaagttaagaaggtaaaa |
4960824 |
T |
|
| Q |
201 |
ctttagtttttaagaaaaaa--ctatgggt-tgttgcacatgaaagaagataaaaagattgcagaccactttccaaaatttatcgcattggtcaatcaaa |
297 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4960823 |
ctttagtttttaagaaaaaaaactatgggagtgttgcacatgaaagaagataaaaagattgcagaccactttccaaaatttatcgcattggtcaatcaaa |
4960724 |
T |
|
| Q |
298 |
tgaaaatgtgggaagaagaaatcactcatcaacaagtggtggaaaaggtaatgagaactcggacaccttaatttgatttcatagtagtggctattgagga |
397 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4960723 |
tgaaaatatgggaagaagaaatcactcatcaacaagtggtggaaaaggtaatgagaactcggacaccttaatttgatttcatagtagtggctattgagga |
4960624 |
T |
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| Q |
398 |
accagaaca |
406 |
Q |
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||||||||| |
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| T |
4960623 |
accagaaca |
4960615 |
T |
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