View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19590_low_1 (Length: 1750)
Name: NF19590_low_1
Description: NF19590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19590_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 1166; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 1166; E-Value: 0
Query Start/End: Original strand, 1 - 1566
Target Start/End: Original strand, 3599709 - 3601274
Alignment:
| Q |
1 |
atatttaatttaattttcttggacctactctgaagaaatatttatctcttctatcataattgaattgactcgtcaattattaacnnnnnnnncttgtaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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|
| T |
3599709 |
atatttaatttaattttcttggacctgctttgaagaaatatttatctcttctatcataattga-----ctcgtcaattattaacttttttttcttgtaaa |
3599803 |
T |
|
| Q |
101 |
agagaaacttggtgatacagagctcttgtcattgacttatctcatatatttaaataaaaatttaagccctttttacggacaaaaatgttattcccttttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
3599804 |
agagaaacttggtgatacagagctcttgtcattgacttatctcatatatttaaataaaaatttaagccctttttactgacaaaaatgttattcccttttg |
3599903 |
T |
|
| Q |
201 |
ttttgtcnnnnnnnttggcgttccttttttgttgataannnnnnnnattctcttaacatatacaattttcattgcactattaaatgtgtattacgatcct |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
3599904 |
ttttgtcaaaaaaattggcgttccttttttgttgataattttttttattctcttaacatatacaattttcattgcactattaaatgtgtattatgatcct |
3600003 |
T |
|
| Q |
301 |
gtttcctcgttcaactgaactttaccaaaacctatgcaagaattttgtttgtnnnnnnnnnnnnnnnnnnntgctatgttttgagaccatggcttaaaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
3600004 |
gtttcctcgttcaactgaactttaccaaaacctatggaagaattttgtttgtaaaaaataaaaataaaaattgctatgtttcgagaccatggcttaaaat |
3600103 |
T |
|
| Q |
401 |
tgattatgttttaagactagcaaacctgtaaatcccctcccctttgagttacacaacattgatgccctcccttgtccnnnnnnnnnn---------tcat |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
3600104 |
tgattatgttttaagactagcaaacctgtaaatcccctcccctttgagttacacaacattgatgccctcccttgtccaaaaaaaaaaaaaaaagaatcat |
3600203 |
T |
|
| Q |
492 |
cattagaaaataaacctatctgtatttatggccggatagcattttgaacgtggggagaagatttttgcagcctgatgagtgttgttagtttccttcttgc |
591 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3600204 |
cattagaaaataaacctatctgtatttatggccggatagcattttgaacgtggggagaagatttttgcagcctgatgagtgttgttagtttccttcttgc |
3600303 |
T |
|
| Q |
592 |
tgagactcatctacattttgaaagctaaaattttaaaattgtatacatattgggagtcaaggatgacagatgtgatataaaatgtgaaatgatgacatat |
691 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3600304 |
tgagactcatctacattttgaaagctaaaattttaaaattgtatacatattgggagtcaaggatgacagatgtgatataaaatgtgaaatgatgacatat |
3600403 |
T |
|
| Q |
692 |
attatgtgatcactttcctcctttattttatttgttcatttaacatggctagtagtatgagaaactgattcactcaatcatttggatggtctttctttct |
791 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3600404 |
attatgtgatcactttcctcctttgttttatttgttcatttaacatggctagtagtatgagaaactgattcactcaatcatttggttggtctttctttct |
3600503 |
T |
|
| Q |
792 |
ttccttcgttannnnnnnnnnnnnnnggtcaaatatcttagtttcaagataaagagatcataaccagcaagtatgatttaatgttatgtctgtaacagga |
891 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3600504 |
ttccttcgtt---tttttttttttttggtcaaatatcttagtttcaagatcaagagatcataaccagcaagtatgatttaatgttatgtctgtaacagga |
3600600 |
T |
|
| Q |
892 |
ctatgaatatgctagtcacaatcctgtagcgtatgatatagcaaaccacttctgtgagatggctgcaaactaccatacagaaacgcctcatattcttgat |
991 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3600601 |
ctatgaatatgctagtcacaatcctgtagcgtatgatatagcaaaccacttctgtgagatggctgcaaactaccatacagaaacgcctcatattcttgat |
3600700 |
T |
|
| Q |
992 |
tatagcaaatatcctggtatgctacctgtggctttctgaagcattcattattttattgtgtcctgtgactgattattttcacgtggctggttctcttgac |
1091 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3600701 |
tatagcaaatatcctggtatgctacctgtggctttctgaagcattcattattttattgtgtcctgtgactgattattttcacgtggctggttctcttgac |
3600800 |
T |
|
| Q |
1092 |
agatgttgaggagcgtgaaagatttgttaaggcgtatttgaggacctcaggtaataga---nnnnnnnnnngtacatctatcttcatcgtttaaatgacc |
1188 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3600801 |
agacgttgaggagcgtgaaagatttgttaaggcgtatttgaggacctcaggtaatagatttatttttttttgtacatctatcttcatcgtttaaatgacc |
3600900 |
T |
|
| Q |
1189 |
gttgtcttgt--acnnnnnnnnngggtaaacttttgaagttttcaatcagctgacatcgatgacctatttcatggtttggaacaaaaatgttgtatggtc |
1286 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3600901 |
gttgtcttgttctctttttttttgggtaaacttttgaagttttcaatcagctaacatcgatgacctatttcatggtttggaacaaaaatgttgtatggtc |
3601000 |
T |
|
| Q |
1287 |
taaatctaacaaagaatatttatatttatatttatatttcaatgtacccttgtattccatcattcatataatcatgaatgaccttaagaactggactgtt |
1386 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3601001 |
taaatctaacaaaga------atatttatatttatatttcaatgtacccttgtattccatcattcatataatcatgaatgaccttaagaactggactgtt |
3601094 |
T |
|
| Q |
1387 |
aatttctgttcctgatattatgggactttaacacaggtgaagaaccaagtgacagtgaagtggagcacttactacaagaagttgagaagtatacacttgc |
1486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3601095 |
aatttctgttcctgatattatgggactttaacacaggtgaagaaccaagtgacagtgaagtggagcacttactacaagaagttgagaagtatacacttgc |
3601194 |
T |
|
| Q |
1487 |
aaatcatctattctggggcctttggggaataatttcggtatgtgcacttttttactttgttattttataattcttatttg |
1566 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3601195 |
aaatcatctattctggggcctttggggaataatttcggtatgtgcacttttttactttgttattttataattcttatttg |
3601274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 1636 - 1726
Target Start/End: Original strand, 3601273 - 3601364
Alignment:
| Q |
1636 |
tgcaccaagggttttgatagactgacnnnnnnnnngtggatatttgcaacaacaa-aaaaatatgtatttaatcttgttggctttggccgcc |
1726 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3601273 |
tgcaccaagggttttgatagactgacaaaagaaaagtggatatttgtaacaacaacaaaaatatgtatttaatcttgttggctttggccgcc |
3601364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 5e-20; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-20
Query Start/End: Original strand, 882 - 1013
Target Start/End: Complemental strand, 15545906 - 15545775
Alignment:
| Q |
882 |
tgtaacaggactatgaatatgctagtcacaatcctgtagcgtatgatatagcaaaccacttctgtgagatggctgcaaactaccatacagaaacgcctca |
981 |
Q |
| |
|
||||| |||| ||||| ||||| ||| | ||||| || || |||||||||||||||||||||| ||| ||||||||||| || ||||| ||||| || || |
|
|
| T |
15545906 |
tgtaataggattatgagtatgcaagttataatccagttgcatatgatatagcaaaccacttctctgaaatggctgcaaattatcataccgaaactccaca |
15545807 |
T |
|
| Q |
982 |
tattcttgattatagcaaatatcctggtatgc |
1013 |
Q |
| |
|
|||||| || ||||| |||||||| ||||||| |
|
|
| T |
15545806 |
tattctcgactatagtaaatatcccggtatgc |
15545775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000003
Query Start/End: Original strand, 1476 - 1538
Target Start/End: Complemental strand, 15325962 - 15325900
Alignment:
| Q |
1476 |
tatacacttgcaaatcatctattctggggcctttggggaataatttcggtatgtgcacttttt |
1538 |
Q |
| |
|
||||||||||||| |||||| || ||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
15325962 |
tatacacttgcaagtcatctcttatggggcctttggggaatcgtttcggtatgttcacttttt |
15325900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000003
Query Start/End: Original strand, 1476 - 1538
Target Start/End: Complemental strand, 15506331 - 15506269
Alignment:
| Q |
1476 |
tatacacttgcaaatcatctattctggggcctttggggaataatttcggtatgtgcacttttt |
1538 |
Q |
| |
|
||||||||||||| |||||| || ||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
15506331 |
tatacacttgcaagtcatctcttatggggcctttggggaatcgtttcggtatgttcacttttt |
15506269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000003
Query Start/End: Original strand, 1468 - 1538
Target Start/End: Complemental strand, 15545377 - 15545307
Alignment:
| Q |
1468 |
ttgagaagtatacacttgcaaatcatctattctggggcctttggggaataatttcggtatgtgcacttttt |
1538 |
Q |
| |
|
|||| |||||||||||||||| |||||| || ||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
15545377 |
ttgaaaagtatacacttgcaagtcatctcttatggggcctttggggaatcgtttcggtatgtttacttttt |
15545307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 952 - 1013
Target Start/End: Complemental strand, 15326420 - 15326359
Alignment:
| Q |
952 |
ggctgcaaactaccatacagaaacgcctcatattcttgattatagcaaatatcctggtatgc |
1013 |
Q |
| |
|
||||||||| || ||||| ||||| || ||||||||||| ||||| |||||||| ||||||| |
|
|
| T |
15326420 |
ggctgcaaattatcataccgaaactccacatattcttgactatagtaaatatcccggtatgc |
15326359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 952 - 1013
Target Start/End: Complemental strand, 15506789 - 15506728
Alignment:
| Q |
952 |
ggctgcaaactaccatacagaaacgcctcatattcttgattatagcaaatatcctggtatgc |
1013 |
Q |
| |
|
||||||||| || ||||| ||||| || ||||||||||| ||||| |||||||| ||||||| |
|
|
| T |
15506789 |
ggctgcaaattatcataccgaaactccacatattcttgactatagtaaatatcccggtatgc |
15506728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 909 - 1010
Target Start/End: Complemental strand, 14332260 - 14332159
Alignment:
| Q |
909 |
acaatcctgtagcgtatgatatagcaaaccacttctgtgagatggctgcaaactaccatacagaaacgcctcatattcttgattatagcaaatatcctgg |
1008 |
Q |
| |
|
|||||||||| |||||||| | ||||| || |||||||| ||||| ||||| ||||| || || ||||||||| ||||||| || || ||||||||||| |
|
|
| T |
14332260 |
acaatcctgttgcgtatgaccttgcaaatcatttctgtgaaatggccgcaaattaccacactgacacgcctcatgttcttgactacagtaaatatcctgg |
14332161 |
T |
|
| Q |
1009 |
ta |
1010 |
Q |
| |
|
|| |
|
|
| T |
14332160 |
ta |
14332159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 909 - 1010
Target Start/End: Complemental strand, 14425270 - 14425169
Alignment:
| Q |
909 |
acaatcctgtagcgtatgatatagcaaaccacttctgtgagatggctgcaaactaccatacagaaacgcctcatattcttgattatagcaaatatcctgg |
1008 |
Q |
| |
|
|||||||||| |||||||| | ||||| || |||||||| ||||| ||||| ||||| || || ||||||||| ||||||| || || ||||||||||| |
|
|
| T |
14425270 |
acaatcctgttgcgtatgaccttgcaaatcatttctgtgaaatggccgcaaattaccacactgacacgcctcatgttcttgactacagtaaatatcctgg |
14425171 |
T |
|
| Q |
1009 |
ta |
1010 |
Q |
| |
|
|| |
|
|
| T |
14425170 |
ta |
14425169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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