View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19590_low_11 (Length: 393)
Name: NF19590_low_11
Description: NF19590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19590_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 36036637 - 36036497
Alignment:
| Q |
17 |
ttgtaacatgtttagccattgctgtggaaggaaacgcattggcaaaaagcaagtaattaactatccatgactttgagggaaaacgaaacttcacctttta |
116 |
Q |
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| T |
36036637 |
ttgtaacatgtttagccattgctgtggaaggaaacgcattggcaaaaagcaagtaattaaccatccatgacgttgagggaaaacgaaacttcacctttta |
36036538 |
T |
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| Q |
117 |
aggaaacatgtcaccatttgacggcgagttgactaatatat |
157 |
Q |
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| T |
36036537 |
aggaaacatgtcaccatttgacggcgagttgactaatatat |
36036497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 247 - 380
Target Start/End: Complemental strand, 36036381 - 36036248
Alignment:
| Q |
247 |
gattaaatatgttccattttattattgtgttaacgatccaaagtacaaaactaaaaattccaagaacattgattaaggaattcacaaggataaatttcat |
346 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36036381 |
gattaaatatgttccattttattattgtgtcaacgatccaaagtacaaaactaaaaattccaagggcattgattaaggaattcacaaggataaatttcat |
36036282 |
T |
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| Q |
347 |
attgaaaataaataccgttgttttttattaagta |
380 |
Q |
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| T |
36036281 |
attgaaaataaatactgttgtttttgattaagta |
36036248 |
T |
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