View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19590_low_12 (Length: 393)

Name: NF19590_low_12
Description: NF19590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19590_low_12
NF19590_low_12
[»] chr3 (2 HSPs)
chr3 (18-357)||(33255626-33255965)
chr3 (159-195)||(2150919-2150955)
[»] chr4 (4 HSPs)
chr4 (137-192)||(22879771-22879826)
chr4 (137-189)||(32009336-32009389)
chr4 (118-170)||(24386710-24386761)
chr4 (137-189)||(32002990-32003042)
[»] chr7 (1 HSPs)
chr7 (137-194)||(18236156-18236212)
[»] chr8 (1 HSPs)
chr8 (137-189)||(39738336-39738388)
[»] chr6 (1 HSPs)
chr6 (137-189)||(24076083-24076134)


Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 33255965 - 33255626
Alignment:
Q  18 agacaaatgaaatatacattgacacaacccgaatgatgtcatgtctacgtgagaatagctcaattggtatagatattgcatgcaatatgtagggattgag 117  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||  |||||| || |||||||    
T  33255965 agacaaatgtaatatacattgactcaacccgaatgatgtcatgtctacgtgagaatagctcaattgatagagatattgcatataatatgcagagattgag 33255866  T
Q  118 gttcgaatctcatattctacacttattcatcttaaaaggtaaatttttagttactaaactacttgacaaaaataaaatctatgcccataaaatttcccaa 217  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  33255865 gttcgaatctcagattctacacttattcatcttaaaaggtaaatttttagttactagattacttgacaaaaataaaatctatgcccataaaatttcccaa 33255766  T
Q  218 acaccccttgcttttaaagaaaatttttaccaattgctagaacgacgcgtgtaatttcatttatttttgcttgttacaaagttttgttgttaaaaattaa 317  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33255765 acaccccttgcttttaaagaaaatgtttaccaattgccagaacgacgcgtgtaatttcatttatttttgcttgttacaaaattttgttgttaaaaattaa 33255666  T
Q  318 atagaatattagaaatttcttccacaaaaaataagttaga 357  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33255665 atagaatattagaaatttcttccacaaaaaataagttaga 33255626  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 2150919 - 2150955
Alignment:
Q  159 aatttttagttactaaactacttgacaaaaataaaat 195  Q
    |||||||||  ||||||||||||||||||||||||||    
T  2150919 aatttttaggcactaaactacttgacaaaaataaaat 2150955  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 22879826 - 22879771
Alignment:
Q  137 cacttattcatcttaaaaggtaaatttttagttactaaactacttgacaaaaataa 192  Q
    ||||||||||||||||||||| |||||||||  |||||| ||||||| ||||||||    
T  22879826 cacttattcatcttaaaaggtgaatttttagcaactaaattacttgaaaaaaataa 22879771  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 32009389 - 32009336
Alignment:
Q  137 cacttattcatcttaa-aaggtaaatttttagttactaaactacttgacaaaaa 189  Q
    |||||||||||||||| ||||| || ||||||| ||||||||| ||||||||||    
T  32009389 cacttattcatcttaagaaggtgaaattttagtcactaaactatttgacaaaaa 32009336  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 24386710 - 24386761
Alignment:
Q  118 gttcgaatctcatattctacacttattcatcttaaaaggtaaatttttagtta 170  Q
    ||||||| |||| ||||| ||||||||||||||||||| | ||||||||||||    
T  24386710 gttcgaacctcagattct-cacttattcatcttaaaagatgaatttttagtta 24386761  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 32002990 - 32003042
Alignment:
Q  137 cacttattcatcttaaaaggtaaatttttagttactaaactacttgacaaaaa 189  Q
    |||||||| | || |||| || ||||||||||||||| |||||||||||||||    
T  32002990 cacttattaacctaaaaatgtgaatttttagttactagactacttgacaaaaa 32003042  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 18236156 - 18236212
Alignment:
Q  137 cacttattcatcttaaaaggtaaatttttagttactaaactacttgacaaaaataaaa 194  Q
    |||||||||||||||| ||||||| ||||||| |||| |||| |||||||||||||||    
T  18236156 cacttattcatcttaagaggtaaa-ttttagtcactagactatttgacaaaaataaaa 18236212  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 39738336 - 39738388
Alignment:
Q  137 cacttattcatcttaaaaggtaaatttttagttactaaactacttgacaaaaa 189  Q
    ||||||||| | |||||| ||||||||||| | ||||||||||||||||||||    
T  39738336 cacttattctttttaaaaagtaaatttttattcactaaactacttgacaaaaa 39738388  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 24076083 - 24076134
Alignment:
Q  137 cacttattcatcttaaaaggtaaatttttagttactaaactacttgacaaaaa 189  Q
    ||||||||||||||||| | | ||||||||| ||||||||||||||| |||||    
T  24076083 cacttattcatcttaaatg-tgaatttttagctactaaactacttgataaaaa 24076134  T

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