View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19590_low_14 (Length: 347)
Name: NF19590_low_14
Description: NF19590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19590_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 269
Target Start/End: Complemental strand, 8148380 - 8148115
Alignment:
| Q |
5 |
ttttgttttacacggagcaatgtatgatcatcgttcatcgattattaatgaaaataaattatgctcttgtacttttcttggaggtaattgtcacatctta |
104 |
Q |
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| T |
8148380 |
ttttgttttagacggagcaatgtatgatcatca-------attattaatgaaaataaattatgctcttgtactttttttgggggtaattgtcacatctta |
8148288 |
T |
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| Q |
105 |
attttaaccgtatactcctttcttttttgctaacaaccgtatactcctttgtgctatgtgt--------ttcctttgtcacagcttattatttttaactc |
196 |
Q |
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| T |
8148287 |
attttaatcgtatactcctttcttttttgctaacaaccgtatactcctttgtgctatgtgtatttgttattcctttgtcacagcttattatttttaactc |
8148188 |
T |
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| Q |
197 |
attagaaaatggcgtcgttatgtactagaatgttatcggcccttccatatataatacaattaatgtattattt |
269 |
Q |
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| T |
8148187 |
attagaaaatggcgtcgttatgtactagaatgttatcggcccttccatatataatacaattaatgtattattt |
8148115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 275 - 333
Target Start/End: Complemental strand, 8142784 - 8142726
Alignment:
| Q |
275 |
atgttattgatgcatatactttttgattgttagctttattttatttatctatattatat |
333 |
Q |
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| T |
8142784 |
atgttattgatgcatatactttttgattgttagctttattttatttatttatattatat |
8142726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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