View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19590_low_18 (Length: 316)
Name: NF19590_low_18
Description: NF19590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19590_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 298
Target Start/End: Original strand, 35450350 - 35450643
Alignment:
| Q |
16 |
atatcaagaatcaaatgaatattacaaatataacaactgaaatttcaatcaagttagatactgtagcataatacataaaaagtctaaggccaag------ |
109 |
Q |
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| T |
35450350 |
atatcaagaatcaaatgaatattacaaatataacaactgaaatttcaatcaagttagatactgtagcataatacataaaaagtctaaggccaaggccaag |
35450449 |
T |
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| Q |
110 |
------taaagatgagacnnnnnnncagaagaaagaaactgcattacctagttcagtgaatttaggctctatttttgcttcattcagtagtgagttcgct |
203 |
Q |
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| T |
35450450 |
gccaagtaaagatgagacaaaaaa-cagaagaaagaaactgcattacctagttcagtgaatttaggctctatttttgcttcattcagtagtgagttcgct |
35450548 |
T |
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| Q |
204 |
acttctttcgggctcatatacgattgcatgcatcgttctatgagatttcgaacctgtaatgagtcacagaaattattgttagcaagtacatgtaa |
298 |
Q |
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| T |
35450549 |
acttctttcgggctcatatacgattgcatgcatcgttctatgagatttcgcacctgtaatgagtcaaagaaattattgttagcaagtacatgtaa |
35450643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 231 - 299
Target Start/End: Original strand, 35450654 - 35450722
Alignment:
| Q |
231 |
atgcatcgttctatgagatttcgaacctgtaatgagtcacagaaattattgttagcaagtacatgtaag |
299 |
Q |
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| T |
35450654 |
atgcatcgttctacgagatttcacatctgtaatgaagcaaaaaaattattgttagcaagtacatgtaag |
35450722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 266
Target Start/End: Complemental strand, 1863739 - 1863679
Alignment:
| Q |
206 |
ttctttcgggctcatatacgattgcatgcatcgttctatgagatttcgaacctgtaatgag |
266 |
Q |
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| T |
1863739 |
ttcttttggactcatatacaattgcatgcatcgctctatgagatttttcacctgtaatgag |
1863679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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