View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19590_low_2 (Length: 1046)
Name: NF19590_low_2
Description: NF19590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19590_low_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 941; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 941; E-Value: 0
Query Start/End: Original strand, 18 - 1046
Target Start/End: Original strand, 3598637 - 3599672
Alignment:
| Q |
18 |
ctgatatcattagcaggtaaatgggaggatgtactagatgcaaatgcgttacaggtgatccctctcaagggggcaatgacaaatgaggtatttgaaataa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3598637 |
ctgatatcattagcaggtaaatgggaggatgtactagatgcaaatgcgttacaggtgatccctctcaagggggcaatgacaaatgaggtatttgaaataa |
3598736 |
T |
|
| Q |
118 |
agtggccagctacaactgaggaaacctcacgaaaagttcttgttaggatctacggggagggtgtggaaattttctttgatagggatgatgaaatacggac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3598737 |
agtggccagctacaactgaggaaacctcacgaaaagttcttgttaggatctacggggagggtgtggaaattttctttgatagggatgatgaaatacggac |
3598836 |
T |
|
| Q |
218 |
atttgagtacatgtcaaagaatggtcagggaccacgtctgcttggacgttttacaaatggacgtgttgaagagtttatccatgcacgggtaatctcacac |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3598837 |
atttgagtacatgtcaaagaatggtcagggaccacgtctactaggacgttttacaaatggacgtgttgaagagtttatccatgcacgggtaatctcacac |
3598936 |
T |
|
| Q |
318 |
cttttatttttaatcttagttctgtagtatagcactcaaaccaacttttagaaaattattatgtttgattaatgattaaaaaccataaaatggattcatt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3598937 |
tttttatttttaatcttagttctgtagtatagcactcaaaccaacttttagaaaattattatgtttgattaatgattaaaaaccataaaatggattcatt |
3599036 |
T |
|
| Q |
418 |
ataaaactagtatcacttcaaatttaggcattttttaattgttcaccctgaagtgttacggttcataaatttattgannnnnnnnaataatgaactacca |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3599037 |
ataaaactagtatcacttcaaatttaggcattttttaattgttcaccctgaagtgttacggttcataaatttattgattttttttaataatgaactacca |
3599136 |
T |
|
| Q |
518 |
aacttatgaactcaatgtgctcatatattccatgtttcccttctgaatttatcagacgctgtcatcttctgatctacgtgatccttccatttctgctctt |
617 |
Q |
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|||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3599137 |
aacttatgaattcgatgtgctcatatattcaatgtttcccttctgaatttatcagacgctgtcagcttctgatctacgtgatccttccatttctgctctt |
3599236 |
T |
|
| Q |
618 |
atagcggccaaaatgaaggagttccatgatctagatatgcctggtgaaaagaaagccaatctttggcctacattgaggtatgtacataataagaa----- |
712 |
Q |
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| T |
3599237 |
atagcggccaaaatgaaggagttccatgatctagatatgcctggtgaaaagaaagccaatctttggcctacattgaggtatgtacataataagaataaga |
3599336 |
T |
|
| Q |
713 |
-taagaatttagttgtgtttaatttgtttaaaaattttacttaaatagttaagtttcaacctcaacatcatttctcagcctattttatttcaatgcttca |
811 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3599337 |
gtaagaatttagttgtgtttaatttgtttaaaaaatttacttaaatagttaagtttcaacctcaacatcatttctcagcctattttatttcaatgcttca |
3599436 |
T |
|
| Q |
812 |
gaaattggcttagtgaggccaaacgtctttcttctccaaaagaagtcgaagctttttatttggacacggtcgacaaggaaatctctattttggaaaagga |
911 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3599437 |
gaaattggcttagtgaggccaaacgtttgtcttctccaaaagaagtcgaagctttttatttggacacggtcgacaaggaaatctctattttggaaaagga |
3599536 |
T |
|
| Q |
912 |
gctgtcaggctcgcatcaacggatagggttttgccacaatgatttgcaatatggtaacataatgcttgacgaagagaccaactctgtgaccataatagtg |
1011 |
Q |
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| T |
3599537 |
gctgtcaggctcgcatcaacggatagggttttgccacaatgatttgcaatatggtaacataatgcttgacgaagagaccaactctgtgaccataatagtg |
3599636 |
T |
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| Q |
1012 |
agtttctc-ttgtactagctagtaaaatcatcattc |
1046 |
Q |
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| T |
3599637 |
agtttctctttgtactagctagtaaaatcatcattc |
3599672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 8e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 927 - 1021
Target Start/End: Complemental strand, 15546083 - 15545989
Alignment:
| Q |
927 |
tcaacggatagggttttgccacaatgatttgcaatatggtaacataatgcttgacgaagagaccaactctgtgaccataatagtgagtttctctt |
1021 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||| || || |||||||||||||||||||||||||||| |
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| T |
15546083 |
tcaacgcatagggttttgccacaatgatttacaatatggtaacatcatgcttgatgaagtaacaaattctgtgaccataatagtgagtttctctt |
15545989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 597 - 662
Target Start/End: Complemental strand, 15546411 - 15546346
Alignment:
| Q |
597 |
gatccttccatttctgctcttatagcggccaaaatgaaggagttccatgatctagatatgcctggt |
662 |
Q |
| |
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| T |
15546411 |
gatccatctatttctgctcttatagcctccaaaatgaaggagttccatgatcttgacatgcctggt |
15546346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 308
Target Start/End: Complemental strand, 14334763 - 14334642
Alignment:
| Q |
187 |
ttttctttgatagggatgatgaaatacggacatttgagtacatgtcaaagaatggtcagggaccacgtctgcttggacgttttacaaatggacgtgttga |
286 |
Q |
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||||||| |||||||||||||||| | |||||||||| ||||| ||||| || ||||| ||||| || ||||| || || || | ||| || ||||| |
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| T |
14334763 |
ttttcttcaatagggatgatgaaatccaaacatttgagtgtatgtcgaagaacggacagggtccacgccttcttggtcggttcacgactggtcgagttga |
14334664 |
T |
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| Q |
287 |
agagtttatccatgcacgggta |
308 |
Q |
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|||||| || ||||| |||||| |
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| T |
14334663 |
agagttcattcatgcccgggta |
14334642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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