View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19590_low_20 (Length: 305)

Name: NF19590_low_20
Description: NF19590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19590_low_20
NF19590_low_20
[»] scaffold0321 (1 HSPs)
scaffold0321 (13-290)||(18288-18567)


Alignment Details
Target: scaffold0321 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 290
Target Start/End: Complemental strand, 18567 - 18288
Alignment:
Q  13 aatattatctgtcttcaaatgtctttcaccacatataaaaccggccttcctctagaaaacaactatgctataaaagctgaagctagagaagttttatcat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18567 aatattatctgtcttcaaatgtctttcaccacatataaaaccggccttcctctagaaaacaactatgctataaaagctgaagctagagaagttttatcat 18468  T
Q  113 aaattctctgtttcccttgttaaactattcttgaaaatggagatgattggtttaattttcaatgaagaag--nnnnnnnntggaaaggattgaatgtaac 210  Q
    |||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||          |||||||| |||||||||||    
T  18467 aaattcttagtttcccttgttaaaccattcttgaaaatggagatgattggtttaattttcaatgaagaagaaaaaaataatggaaagggttgaatgtaac 18368  T
Q  211 agaatccattgcactttgtggaaagatcaagttggaaagatgcaacagtatctagataactgttctggaccggccaaaag 290  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  18367 agaatccattgcactgtgtggaaagatcaagctggaaagatgcaacagtatctagataactgttttggaccggccaaaag 18288  T

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