View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19590_low_31 (Length: 242)
Name: NF19590_low_31
Description: NF19590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19590_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 44688999 - 44689101
Alignment:
| Q |
19 |
cagactttcccctttgtccgattatcctgattactccaacttgttctggccacctcctgactggatccttaaaatgctgcagcattcataaaaagattat |
118 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44688999 |
cagagtttcccctttgtccgattatcctgatcactccaacttgttctggccacctcctgactggatccttaaaatgctgcagcattcataaaaagattat |
44689098 |
T |
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| Q |
119 |
ctt |
121 |
Q |
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||| |
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| T |
44689099 |
ctt |
44689101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 44689156 - 44689245
Alignment:
| Q |
137 |
cagttgccaaaagtgttctctttcctagaagacttggtannnnnnncttttcaattccttcaattgctcttgtttctcacccctcatatg |
226 |
Q |
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| T |
44689156 |
cagttgccaaaagtgttctctttcctagaagacttggtatttttttcttttcaattccttcaattgctcttgtttctcacccctcatatg |
44689245 |
T |
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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 7025634 - 7025579
Alignment:
| Q |
31 |
tttgtccgattatcctgattactccaacttgttctggccacctcctgactggatcc |
86 |
Q |
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| T |
7025634 |
tttgtccgattatcctgaatattccaacttgttctggccacctccagagtggatcc |
7025579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 7041388 - 7041351
Alignment:
| Q |
38 |
gattatcctgattactccaacttgttctggccacctcc |
75 |
Q |
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| T |
7041388 |
gattatcctgaatattccaacttgttctggccacctcc |
7041351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 41980751 - 41980690
Alignment:
| Q |
24 |
tttcccctttgtccgattatcctgattactccaacttgttctggccacctcctgactggatc |
85 |
Q |
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||||||||||||||||||||||||| |||| ||||||||| |||||||||| || |||||| |
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| T |
41980751 |
tttcccctttgtccgattatcctgaatactacaacttgttagggccacctccggaatggatc |
41980690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 41985525 - 41985464
Alignment:
| Q |
24 |
tttcccctttgtccgattatcctgattactccaacttgttctggccacctcctgactggatc |
85 |
Q |
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| T |
41985525 |
tttcccctttgtctgattatcctgagtactccacctcgttttggccacctccggaatggatc |
41985464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 9432776 - 9432720
Alignment:
| Q |
29 |
cctttgtccgattatcctgattactccaacttgttctggccacctcctgactggatc |
85 |
Q |
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|||||||| ||||||||||| || | ||||||||||||||||||||| || |||||| |
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| T |
9432776 |
cctttgtctgattatcctgaatattacaacttgttctggccacctccggagtggatc |
9432720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 9617700 - 9617745
Alignment:
| Q |
40 |
ttatcctgattactccaacttgttctggccacctcctgactggatc |
85 |
Q |
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| T |
9617700 |
ttatcctgaatacttcaacttgttctggccacctccggattggatc |
9617745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 20694498 - 20694560
Alignment:
| Q |
23 |
ctttcccctttgtccgattatcctgattactccaacttgttctggccacctcctgactggatc |
85 |
Q |
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||||| |||||||||||||||||||| || | |||||||||||||| |||||||| |||||| |
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| T |
20694498 |
ctttcacctttgtccgattatcctgaatattttaacttgttctggcctcctcctgagtggatc |
20694560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 18991102 - 18991041
Alignment:
| Q |
23 |
ctttcccctttgtccgattatcctgattactccaacttgttctggccacctcctgactggat |
84 |
Q |
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||||| |||||||| |||||||||| |||| ||||||||||||||||||||| || ||||| |
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| T |
18991102 |
ctttctcctttgtctcattatcctgactacttcaacttgttctggccacctccggagtggat |
18991041 |
T |
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