View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19590_low_32 (Length: 237)
Name: NF19590_low_32
Description: NF19590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19590_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 50905156 - 50904933
Alignment:
| Q |
1 |
aagaaactcttgaagactataaatacactactactttccatcacaaatcattcacatactcaagcatcaaaagataaatactcttttccttaaatttgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50905156 |
aagaaactcttgaagactataaatacactactactttccatcacaaatcattcacatactcaagcatcaaaagataaatactcttttccttaaatttgag |
50905057 |
T |
|
| Q |
101 |
aggtttagtctgttgtttgaaacatttaaaatgggcttctgtttaccagcagctataagaagggcttcctttagtagtagccaagcatcaacaaaagcga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50905056 |
aggtttagtctgttgtttgaaacatttaaaatgggcttctgtttaccagcagctataagaagggcttcctttagtagtagccaagcatcaacaaaagcga |
50904957 |
T |
|
| Q |
201 |
caaatgtgccaaagggatatcttg |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
50904956 |
caaatgtgccaaagggatatcttg |
50904933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 40 - 184
Target Start/End: Complemental strand, 48838976 - 48838834
Alignment:
| Q |
40 |
atcacaaatcattcacatactcaagcatcaaaagataaatactcttttccttaaatttgagaggtttagtctgttgtttgaaacatttaaaatgggcttc |
139 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| || | ||||||||||||| | ||||||| |
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| T |
48838976 |
atcacaagtcattcacatactcaagcatcaaaagataaatact-ttttccttaaatttgagagttttagcttgctctttgaaacatttagcaagggcttc |
48838878 |
T |
|
| Q |
140 |
tgtttaccagcagctataagaagggcttcctttagtagtagccaa |
184 |
Q |
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||||||| ||||| ||||||| ||| ||||||| ||||||||| |
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| T |
48838877 |
cgtttacctgcagcaataagaatggc-acctttagcagtagccaa |
48838834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 224
Target Start/End: Original strand, 38043719 - 38043902
Alignment:
| Q |
40 |
atcacaaatcattcacatactcaagcatcaaaagataaatactcttttccttaaatttgagaggtttagtctgttgtttgaaacatttaaaatgggcttc |
139 |
Q |
| |
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||||||| ||||||||| || ||||||||||||||||||||| |||| | |||||||||||| || || | || |||||||||||||||||||||||| |
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| T |
38043719 |
atcacaagtcattcacacgctgaagcatcaaaagataaatact-ttttacgtaaatttgagagcttaagcttattctttgaaacatttaaaatgggcttc |
38043817 |
T |
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| Q |
140 |
tgtttaccagcagctataagaagggcttcctttagtagtagccaagcatcaacaaaagcgacaaatgtgccaaagggatatcttg |
224 |
Q |
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|||||| ||||||||| ||||||||| ||||| || |||||| ||||| |||| ||||||||||||||| | ||||||| |
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| T |
38043818 |
catttacctgcagctatagtaagggcttcatttagaagcagccaaacatcattgaaagtcacaaatgtgccaaagagctatcttg |
38043902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 50909858 - 50909929
Alignment:
| Q |
120 |
aaacatttaaaatgggcttctgtttaccagcagctataagaagggcttcctttagtagtagccaagcatcaa |
191 |
Q |
| |
|
|||||||| ||||||| ||| |||||||||||||||| ||| | ||||| ||||| ||||||||| |||||| |
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|
| T |
50909858 |
aaacatttgaaatgggtttccgtttaccagcagctattagacgagcttcatttagcagtagccaaacatcaa |
50909929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 38037026 - 38036966
Alignment:
| Q |
129 |
aaatgggcttctgtttaccagcagctataagaagggcttcctttagtagtagccaagcatc |
189 |
Q |
| |
|
||||||| ||| ||||||| |||||||| ||| ||||||||||||| ||||||||| |||| |
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| T |
38037026 |
aaatgggtttccgtttacctgcagctattagacgggcttcctttagcagtagccaaacatc |
38036966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 38043674 - 38043703
Alignment:
| Q |
1 |
aagaaactcttgaagactataaatacacta |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
38043674 |
aagaaactcttgaagactataaatacacta |
38043703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 17970066 - 17970298
Alignment:
| Q |
1 |
aagaaactcttgaagactataaatacactac-tacttt-----ccatcacaaatcattcacatactcaagcatcaaaagataaatactcttttccttaaa |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||| ||||||||| |||||||||||||| | ||||||||||||||| | |||| ||||| |
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| T |
17970066 |
aagaaactcttgaagactataaatacactacattctttcacaaccatcacaagtcattcacatactcgataatcaaaagataaatattttttttcttaa- |
17970164 |
T |
|
| Q |
95 |
tttgagaggtttagtctgttgtttgaaacatttaa-----aatgggcttctgtttaccagcagctataagaagggcttcctttagtagtagccaagcatc |
189 |
Q |
| |
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| ||||| ||||| |||| ||||| ||||||| |||||||||| ||||||| |||||||||||||||| | ||||| || |||||| | || |
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| T |
17970165 |
-tcgagagctttagcttgttctttgacgcatttaatttagaatgggcttccgtttacctgcagctataagaagggtgacatttagcagcagccaaacgtc |
17970263 |
T |
|
| Q |
190 |
aacaaaagcgacaaatgtgccaaagggatatcttg |
224 |
Q |
| |
|
| |||| |||||||||||||||||||||||| |
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| T |
17970264 |
attgaaagtagcaaatgtgccaaagggatatcttg |
17970298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 3073336 - 3073568
Alignment:
| Q |
1 |
aagaaactcttgaagactataaatacactac-tacttt-----ccatcacaaatcattcacatactcaagcatcaaaagataaatactcttttccttaaa |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||| ||||||||| |||||||||||||| | ||||||||||||||| | |||| ||||| |
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| T |
3073336 |
aagaaactcttgaagactataaatacactacattctttcacaaccatcacaagtcattcacatactcgataatcaaaagataaatattttttttcttaa- |
3073434 |
T |
|
| Q |
95 |
tttgagaggtttagtctgttgtttgaaacatttaa-----aatgggcttctgtttaccagcagctataagaagggcttcctttagtagtagccaagcatc |
189 |
Q |
| |
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| ||||| ||||| |||| ||||| ||||||| |||||||||| ||||||| |||||||||||||||| | ||||| || |||||| | || |
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| T |
3073435 |
-tcgagagctttagcttgttctttgacgcatttaatttagaatgggcttccgtttacctgcagctataagaagggtgacatttagcagcagccaaacgtc |
3073533 |
T |
|
| Q |
190 |
aacaaaagcgacaaatgtgccaaagggatatcttg |
224 |
Q |
| |
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| |||| |||||||||||||||||||||||| |
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|
| T |
3073534 |
attgaaagtagcaaatgtgccaaagggatatcttg |
3073568 |
T |
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