View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19590_low_37 (Length: 229)

Name: NF19590_low_37
Description: NF19590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19590_low_37
NF19590_low_37
[»] chr1 (11 HSPs)
chr1 (5-221)||(15016434-15016650)
chr1 (7-229)||(15036341-15036563)
chr1 (1-221)||(15010315-15010535)
chr1 (1-224)||(15024432-15024655)
chr1 (1-224)||(15031773-15031996)
chr1 (1-221)||(15001422-15001642)
chr1 (7-221)||(14503303-14503517)
chr1 (111-229)||(14523193-14523311)
chr1 (91-221)||(15040161-15040291)
chr1 (87-221)||(14467204-14467338)
chr1 (87-221)||(14533322-14533456)
[»] scaffold0400 (2 HSPs)
scaffold0400 (87-221)||(5892-6026)
scaffold0400 (114-229)||(12207-12322)
[»] scaffold0365 (2 HSPs)
scaffold0365 (87-221)||(6536-6670)
scaffold0365 (114-229)||(12850-12965)
[»] chr7 (3 HSPs)
chr7 (114-219)||(17847959-17848064)
chr7 (87-229)||(16102283-16102425)
chr7 (87-229)||(16171961-16172103)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 15016434 - 15016650
Alignment:
Q  5 atttatatgataataattttgttggtcatttacctcaaaatatttgtgtcggtgggaagttgagacgattcactgcagcacttaaccagttcacaggcct 104  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |  |||| |||| || ||||||||||||||||||||    
T  15016434 atttgtatgataataattttgttggtcatttacctcataatatttgtgtcggtgggaagttggaaaaattctctgctgctcttaaccagttcacaggcct 15016533  T
Q  105 agttcaagagagtttgaagaattgctccagccttaagagagtgaggattaaacaaaaccaattgactggaaatataacagatagttttggtgtgtatcca 204  Q
    ||||| ||||||||||||||||||||| |||||||||||| ||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  15016534 agttccagagagtttgaagaattgctcaagccttaagagactgaggcttgaacaaaaccaactgactggaaatataacaaatagttttggtgtgtatcca 15016633  T
Q  205 aacttggactacatgga 221  Q
    |||||||||||||||||    
T  15016634 aacttggactacatgga 15016650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 15036341 - 15036563
Alignment:
Q  7 ttatatgataataattttgttggtcatttacctcaaaatatttgtgtcggtgggaagttgagacgattcactgcagcacttaaccagttcacaggcctag 106  Q
    |||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||| | |  ||||||||| |||||||||||||||| ||||||||    
T  15036341 ttatatgataataaatttattggtcatttacctcacaatatttgtgtcggtgggaagttaaaaacattcactgctgcacttaaccagttcagaggcctag 15036440  T
Q  107 ttcaagagagtttgaagaattgctccagccttaagagagtgaggattaaacaaaaccaattgactggaaatataacagatagttttggtgtgtatccaaa 206  Q
    ||| ||||||||||||||||||||| |||||| ||||| ||||| |||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  15036441 ttccagagagtttgaagaattgctcaagccttgagagattgaggcttaaccaaaaccaactgactggaaatataacagagagttttggtgtgtatccaaa 15036540  T
Q  207 cttggactacatggacttaagtg 229  Q
    |||||||||||||||||| ||||    
T  15036541 cttggactacatggacttgagtg 15036563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 15010315 - 15010535
Alignment:
Q  1 ctccatttatatgataataattttgttggtcatttacctcaaaatatttgtgtcggtgggaagttgagacgattcactgcagcacttaaccagttcacag 100  Q
    |||||||||| |||||||| ||||||||||||||||||||| ||||||||||| ||||||||||| | |  ||||||||| |||||||||||||||||||    
T  15010315 ctccatttatctgataatatttttgttggtcatttacctcacaatatttgtgttggtgggaagttaaaaacattcactgctgcacttaaccagttcacag 15010414  T
Q  101 gcctagttcaagagagtttgaagaattgctccagccttaagagagtgaggattaaacaaaaccaattgactggaaatataacagatagttttggtgtgta 200  Q
    ||||||||| ||||||||||||||||||||| ||||||| |||| ||||| || | ||||||||| | ||||||||||||||||| ||||||||||||||    
T  15010415 gcctagttccagagagtttgaagaattgctcaagccttacgagactgaggcttgatcaaaaccaacttactggaaatataacagagagttttggtgtgta 15010514  T
Q  201 tccaaacttggactacatgga 221  Q
    |||||||||||||||||||||    
T  15010515 tccaaacttggactacatgga 15010535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 15024432 - 15024655
Alignment:
Q  1 ctccatttatatgataataattttgttggtcatttacctcaaaatatttgtgtcggtgggaagttgagacgattcactgcagcacttaaccagttcacag 100  Q
    ||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||| | | |  ||||||||| | ||||||||||||||| |    
T  15024432 ctccatttagatgttaataattttgttggtcatttacctcacaatatttgtgtcggtgggaagataaaaaaattcactgctggacttaaccagttcactg 15024531  T
Q  101 gcctagttcaagagagtttgaagaattgctccagccttaagagagtgaggattaaacaaaaccaattgactggaaatataacagatagttttggtgtgta 200  Q
    || |||||| ||||||||||||||||||||  |||||||| ||||||||| || | ||||||||| ||||||||||||||||| ||||||||||||||||    
T  15024532 gcttagttccagagagtttgaagaattgcttaagccttaaaagagtgaggcttgatcaaaaccaactgactggaaatataacaaatagttttggtgtgta 15024631  T
Q  201 tccaaacttggactacatggactt 224  Q
    |||||||||| |||||||||||||    
T  15024632 tccaaacttgtactacatggactt 15024655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 15031773 - 15031996
Alignment:
Q  1 ctccatttatatgataataattttgttggtcatttacctcaaaatatttgtgtcggtgggaagttgagacgattcactgcagcacttaaccagttcacag 100  Q
    ||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||| | | |  ||||||||| | ||||||||||||||| |    
T  15031773 ctccatttagatgttaataattttgttggtcatttacctcacaatatttgtgtcggtgggaagataaaaaaattcactgctggacttaaccagttcactg 15031872  T
Q  101 gcctagttcaagagagtttgaagaattgctccagccttaagagagtgaggattaaacaaaaccaattgactggaaatataacagatagttttggtgtgta 200  Q
    || |||||| ||||||||||||||||||||  |||||||| ||||||||| || | ||||||||| ||||||||||||||||| ||||||||||||||||    
T  15031873 gcttagttccagagagtttgaagaattgcttaagccttaaaagagtgaggcttgatcaaaaccaactgactggaaatataacaaatagttttggtgtgta 15031972  T
Q  201 tccaaacttggactacatggactt 224  Q
    |||||||||| |||||||||||||    
T  15031973 tccaaacttgtactacatggactt 15031996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 15001422 - 15001642
Alignment:
Q  1 ctccatttatatgataataattttgttggtcatttacctcaaaatatttgtgtcggtgggaagttgagacgattcactgcagcacttaaccagttcacag 100  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||  |||||||||||| | |   |||||||  |||||||||||||||||||    
T  15001422 ctccatttatctgataataattttgttggtcatttacctcacaatatttgtaacggtgggaagttaaaaatgttcactgttgcacttaaccagttcacag 15001521  T
Q  101 gcctagttcaagagagtttgaagaattgctccagccttaagagagtgaggattaaacaaaaccaattgactggaaatataacagatagttttggtgtgta 200  Q
    ||||||||| ||||||||||||||||||||| ||||||| |||||||||  || ||||||||||| ||||||||||||||||||| || |||||||||||    
T  15001522 gcctagttccagagagtttgaagaattgctcaagccttacgagagtgagacttcaacaaaaccaactgactggaaatataacagacagctttggtgtgta 15001621  T
Q  201 tccaaacttggactacatgga 221  Q
    |||||| ||||| ||||||||    
T  15001622 tccaaatttggaatacatgga 15001642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 14503303 - 14503517
Alignment:
Q  7 ttatatgataataattttgttggtcatttacctcaaaatatttgtgtcggtgggaagttgagacgattcactgc-agcacttaaccagttcacaggccta 105  Q
    |||| ||||||||||||  | || ||||||||||| || |||||||| ||||| | ||||| |   |||||||| || | | ||||| |||||||| | |    
T  14503303 ttatctgataataatttcataggccatttacctcacaacatttgtgttggtggaatgttgacaaatttcactgctagtaat-aaccaattcacagggcca 14503401  T
Q  106 gttcaagagagtttgaagaattgctccagccttaagagagtgaggattaaacaaaaccaattgactggaaatataacagatagttttggtgtgtatccaa 205  Q
     ||| | ||||||| |||||||||||||||||||  ||||| ||| || || |||| ||||| |||||||||||||||||| |||||||||| ||||||     
T  14503402 attccaaagagtttaaagaattgctccagccttattagagttaggcttcaaaaaaatcaattaactggaaatataacagatggttttggtgtttatccac 14503501  T
Q  206 acttggactacatgga 221  Q
    | ||||||||||||||    
T  14503502 atttggactacatgga 14503517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 111 - 229
Target Start/End: Complemental strand, 14523311 - 14523193
Alignment:
Q  111 agagagtttgaagaattgctccagccttaagagagtgaggattaaacaaaaccaattgactggaaatataacagatagttttggtgtgtatccaaacttg 210  Q
    ||||||||||||||| || || |||||||  ||| ||||  |||| |||||| || |||| ||||||||||||||||||||||||||||||||||| |||    
T  14523311 agagagtttgaagaactgttctagccttataagattgagacttaaccaaaacaaaatgacaggaaatataacagatagttttggtgtgtatccaaatttg 14523212  T
Q  211 gactacatggacttaagtg 229  Q
    |||||||| || |||||||    
T  14523211 gactacatagaattaagtg 14523193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 91 - 221
Target Start/End: Original strand, 15040161 - 15040291
Alignment:
Q  91 cagttcacaggcctagttcaagagagtttgaagaattgctccagccttaagagagtgaggattaaacaaaaccaattgactggaaatataacagatagtt 190  Q
    ||||||||||| | | ||| | |||||||||||||||| || || || |||||||||||  || ||||||||||| |  ||||||||||||||||||| |    
T  15040161 cagttcacaggtccaattccaaagagtttgaagaattgttcaagtctaaagagagtgagacttgaacaaaaccaacttgctggaaatataacagatagct 15040260  T
Q  191 ttggtgtgtatccaaacttggactacatgga 221  Q
    ||||||||| |||||||||| ||||||||||    
T  15040261 ttggtgtgtgtccaaacttgtactacatgga 15040291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 221
Target Start/End: Original strand, 14467204 - 14467338
Alignment:
Q  87 taaccagttcacaggcctagttcaagagagtttgaagaattgctccagccttaagagagtgaggattaaacaaaaccaattgactggaaatataacagat 186  Q
    |||||| |||||||||| | ||| | ||||||||||||| ||||| |||||| | ||||| ||| || ||||||| ||| | ||||  |||||||| |||    
T  14467204 taaccaattcacaggcccaattccaaagagtttgaagaactgctctagcctttatagagtaaggcttcaacaaaatcaactaactgacaatataactgat 14467303  T
Q  187 agttttggtgtgtatccaaacttggactacatgga 221  Q
       ||||| ||| ||||||| ||||||||||||||    
T  14467304 gcctttggcgtgcatccaaaattggactacatgga 14467338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 221
Target Start/End: Complemental strand, 14533456 - 14533322
Alignment:
Q  87 taaccagttcacaggcctagttcaagagagtttgaagaattgctccagccttaagagagtgaggattaaacaaaaccaattgactggaaatataacagat 186  Q
    |||||| |||||||||| | ||| | ||||||||||||| |||||||| ||||  ||||| ||  || ||||||| ||| | ||||  |||||||| |||    
T  14533456 taaccaattcacaggcccaattccaaagagtttgaagaagtgctccagtcttatcagagtaagacttcaacaaaatcaaataactgacaatataactgat 14533357  T
Q  187 agttttggtgtgtatccaaacttggactacatgga 221  Q
       ||||| ||||||||||| ||||||||||||||    
T  14533356 gcctttggcgtgtatccaaatttggactacatgga 14533322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 87 - 221
Target Start/End: Original strand, 5892 - 6026
Alignment:
Q  87 taaccagttcacaggcctagttcaagagagtttgaagaattgctccagccttaagagagtgaggattaaacaaaaccaattgactggaaatataacagat 186  Q
    |||||||||||  || ||||||| | ||||||| || |||||||| |||||||||||||||||  || ||||||||||| |||||| |||||||||||||    
T  5892 taaccagttcattggtctagttccaaagagtttaaaaaattgctcaagccttaagagagtgagacttcaacaaaaccaactgactgcaaatataacagat 5991  T
Q  187 agttttggtgtgtatccaaacttggactacatgga 221  Q
    || |||||||||||||| || ||||| || |||||    
T  5992 agctttggtgtgtatccgaatttggaatatatgga 6026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 114 - 229
Target Start/End: Original strand, 12207 - 12322
Alignment:
Q  114 gagtttgaagaattgctccagccttaagagagtgaggattaaacaaaaccaattgactggaaatataacagatagttttggtgtgtatccaaacttggac 213  Q
    ||||||||||||||||||||||||||  ||||| ||| || || |||| ||||| |||||||||||||||||| |||||||||| |||||| | |||| |    
T  12207 gagtttgaagaattgctccagccttattagagttaggcttcaaaaaaatcaattaactggaaatataacagatggttttggtgtttatccacatttggtc 12306  T
Q  214 tacatggacttaagtg 229  Q
    |||||||| |||||||    
T  12307 tacatggaattaagtg 12322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 87 - 221
Target Start/End: Original strand, 6536 - 6670
Alignment:
Q  87 taaccagttcacaggcctagttcaagagagtttgaagaattgctccagccttaagagagtgaggattaaacaaaaccaattgactggaaatataacagat 186  Q
    |||||||||||  || ||||||| | ||||||| || |||||||| |||||||||||||||||  || ||||||||||| |||||| |||||||||||||    
T  6536 taaccagttcattggtctagttccaaagagtttaaaaaattgctcaagccttaagagagtgagacttcaacaaaaccaactgactgcaaatataacagat 6635  T
Q  187 agttttggtgtgtatccaaacttggactacatgga 221  Q
    || |||||||||||||| || ||||| || |||||    
T  6636 agctttggtgtgtatccgaatttggaatatatgga 6670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 114 - 229
Target Start/End: Original strand, 12850 - 12965
Alignment:
Q  114 gagtttgaagaattgctccagccttaagagagtgaggattaaacaaaaccaattgactggaaatataacagatagttttggtgtgtatccaaacttggac 213  Q
    ||||||||||||||||||||||||||  ||||| ||| || || |||| ||||| |||||||||||||||||| |||||||||| |||||| | |||| |    
T  12850 gagtttgaagaattgctccagccttattagagttaggcttcaaaaaaatcaattaactggaaatataacagatggttttggtgtttatccacatttggtc 12949  T
Q  214 tacatggacttaagtg 229  Q
    |||||||| |||||||    
T  12950 tacatggaattaagtg 12965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 17847959 - 17848064
Alignment:
Q  114 gagtttgaagaattgctccagccttaagagagtgaggattaaacaaaaccaattgactggaaatataacagatagttttggtgtgtatccaaacttggac 213  Q
    |||||||||||||||||| ||| ||   ||| | ||| || ||||||||||| |  |||||||||||||||||   |||||||||||||| || |||||     
T  17847959 gagtttgaagaattgctcaagcattgtaagaattaggcttgaacaaaaccaactttctggaaatataacagatttctttggtgtgtatccgaatttggat 17848058  T
Q  214 tacatg 219  Q
    ||||||    
T  17848059 tacatg 17848064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 229
Target Start/End: Original strand, 16102283 - 16102425
Alignment:
Q  87 taaccagttcacaggcctagttcaagagagtttgaagaattgctccagccttaagagagtgaggattaaacaaaaccaattgactggaaatataacagat 186  Q
    |||||| ||||| |||| |||||   ||||||||||||||||||| ||| |||  ||| | ||  || | ||||||||| | ||||||||||||||| |     
T  16102283 taaccacttcaccggccgagttcctaagagtttgaagaattgctctagcattataagacttagacttgaccaaaaccaacttactggaaatataacacaa 16102382  T
Q  187 agttttggtgtgtatccaaacttggactacatggacttaagtg 229  Q
      |||| |||| |||||||| ||| | ||||| ||||||||||    
T  16102383 gattttagtgtttatccaaatttgaattacatagacttaagtg 16102425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 229
Target Start/End: Original strand, 16171961 - 16172103
Alignment:
Q  87 taaccagttcacaggcctagttcaagagagtttgaagaattgctccagccttaagagagtgaggattaaacaaaaccaattgactggaaatataacagat 186  Q
    |||||| ||||| |||| |||||   ||||||||||||||||||| ||| |||  ||| | ||  || | ||||||||| | ||||||||||||||| |     
T  16171961 taaccacttcaccggccgagttcctaagagtttgaagaattgctctagcattataagacttagacttgaccaaaaccaacttactggaaatataacacaa 16172060  T
Q  187 agttttggtgtgtatccaaacttggactacatggacttaagtg 229  Q
      |||| |||| |||||||| ||| | ||||| ||||||||||    
T  16172061 gattttagtgtttatccaaatttgaattacatagacttaagtg 16172103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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