View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19590_low_40 (Length: 214)
Name: NF19590_low_40
Description: NF19590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19590_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 42846426 - 42846604
Alignment:
| Q |
16 |
aatatctttgttgcacgaactcaagaaagttgaacagtaatcaagttgaaaatatttctctctcaaggaaaaactagcttttttgtgaggtacaaaagaa |
115 |
Q |
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| T |
42846426 |
aatatctttgttgcacgaactcaagaaagttgaacagtaatcaagttgaaaatatttctctctcaaggaaaaactagcttttttgtgaggtacaaaagaa |
42846525 |
T |
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| Q |
116 |
acctaaccagtaaccatttcattcccatttctaacacgagaaaagttccaacactttttacctccactcaagttccaaa |
194 |
Q |
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| T |
42846526 |
atctaaccagtaaccatttcattcccatttctaacacgagaaaagttccaacactttttacctccactcaagttccaaa |
42846604 |
T |
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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 42825816 - 42825886
Alignment:
| Q |
76 |
tctcaaggaaaaactagctttttt-gtgaggtacaaaagaaacctaaccagtaaccatttcattcccatttctaac |
150 |
Q |
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| T |
42825816 |
tctcaaggaaaaactagcttttttcgtgaggtacaaaa-----caaaccagtaaccatttcatttccatttctaac |
42825886 |
T |
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