View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19590_low_41 (Length: 214)
Name: NF19590_low_41
Description: NF19590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19590_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 23 - 199
Target Start/End: Original strand, 15632635 - 15632811
Alignment:
| Q |
23 |
gatccatcactcctctaaccacctcacgcaaactcccttctctcaacacttcatcatcttcttctttaaaagaaaacaataaccctcgtagatccacttc |
122 |
Q |
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| T |
15632635 |
gatccatcactcctctaaccacctcacgcaagctcccttctctcaacacttcatcatcttcttctttaaaagaaaacaataaccctcgtagatccacttc |
15632734 |
T |
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| Q |
123 |
tcgtggacccattcacccaacccaaaagcccttaacccgatccattcctcgtactgatcgtagatcctcttcttctt |
199 |
Q |
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| T |
15632735 |
tcgtggacccattcacccaacccaaaagcccttaacccgatccattcctcgtactgatcgtagatcctcttcttctt |
15632811 |
T |
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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 35563633 - 35563562
Alignment:
| Q |
41 |
ccacctcacgcaaactcccttctctcaacacttcatcatcttcttctttaaaagaaaacaataaccctcgtagatcca |
118 |
Q |
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| T |
35563633 |
ccacctcacgcaaactcccttctctcaacacttcatcttcttc------aaaagaaaacaataacccttttagatcca |
35563562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 1148799 - 1148728
Alignment:
| Q |
41 |
ccacctcacgcaaactcccttctctcaacacttcatcatcttcttctttaaaagaaaacaataaccctcgtagatcca |
118 |
Q |
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|||||||||||||||||| | |||||||||| ||||| ||||| ||||||||||||||||||| ||||||||| |
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| T |
1148799 |
ccacctcacgcaaactccatactctcaacacctcatcttcttc------aaaagaaaacaataacccttgtagatcca |
1148728 |
T |
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