View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19590_low_42 (Length: 201)

Name: NF19590_low_42
Description: NF19590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19590_low_42
NF19590_low_42
[»] chr1 (26 HSPs)
chr1 (18-176)||(15036196-15036354)
chr1 (17-176)||(15024293-15024452)
chr1 (17-176)||(15031634-15031793)
chr1 (19-176)||(15010176-15010333)
chr1 (17-166)||(15016301-15016450)
chr1 (17-161)||(15001298-15001442)
chr1 (82-176)||(15009960-15010054)
chr1 (82-176)||(15031058-15031152)
chr1 (58-176)||(14533563-14533681)
chr1 (56-167)||(14503167-14503278)
chr1 (92-167)||(15024014-15024089)
chr1 (92-167)||(15031355-15031430)
chr1 (65-174)||(14523449-14523558)
chr1 (112-176)||(15023861-15023925)
chr1 (112-176)||(15031202-15031266)
chr1 (115-168)||(14481601-14481654)
chr1 (115-184)||(15016139-15016208)
chr1 (112-176)||(15001141-15001205)
chr1 (58-149)||(14467006-14467097)
chr1 (126-176)||(15009744-15009794)
chr1 (126-176)||(15030842-15030892)
chr1 (115-159)||(14533908-14533952)
chr1 (71-167)||(15036061-15036157)
chr1 (101-176)||(15024149-15024224)
chr1 (101-176)||(15031490-15031565)
chr1 (52-133)||(15039975-15040056)
[»] scaffold0400 (5 HSPs)
scaffold0400 (51-148)||(5695-5792)
scaffold0400 (113-167)||(11964-12018)
scaffold0400 (115-167)||(11532-11584)
scaffold0400 (92-157)||(11686-11751)
scaffold0400 (115-168)||(11819-11872)
[»] scaffold0365 (5 HSPs)
scaffold0365 (51-148)||(6339-6436)
scaffold0365 (113-167)||(12607-12661)
scaffold0365 (115-167)||(12175-12227)
scaffold0365 (92-157)||(12329-12394)
scaffold0365 (115-168)||(12462-12515)
[»] chr5 (1 HSPs)
chr5 (115-155)||(37025817-37025857)


Alignment Details
Target: chr1 (Bit Score: 119; Significance: 5e-61; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 15036354 - 15036196
Alignment:
Q  18 ttattatcatataaatggagtgcttccaaatcggtaagcctattcatttctgttggaatattttcagtgaaagaatttgagtaaagagttaatgcactga 117  Q
    |||||||||||||| | |||| |||||||||| ||||||||||||||||||| ||||||||| ||||||| |||||||||  ||||||||||||||||||    
T  15036354 ttattatcatataattcgagtacttccaaatccgtaagcctattcatttctgctggaatattctcagtgagagaatttgataaaagagttaatgcactga 15036255  T
Q  118 gttttgtcaaatttccgatagtggaaggaattggtccagagagattatttagtgaaagg 176  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15036254 gttttgtcaaattttcgatagtggaaggaattggtccagagagattatttagtgaaagg 15036196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 15024452 - 15024293
Alignment:
Q  17 attattatcatataaatggagtgcttccaaatcggtaagcctattcatttctgttggaatattttcagtgaaagaatttgagtaaagagttaatgcactg 116  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||  |  |||||  |||| | ||     
T  15024452 attattaacatctaaatggagtgcttccaaatcggtaagcctattcatttctgttggaatattctcagtgagagaattaaatgaaagatgtaattcgcta 15024353  T
Q  117 agttttgtcaaatttccgatagtggaaggaattggtccagagagattatttagtgaaagg 176  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  15024352 agttttgtcaaatttccgatagtggatggaattggtccagagagattattttgtgaaagg 15024293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 15031793 - 15031634
Alignment:
Q  17 attattatcatataaatggagtgcttccaaatcggtaagcctattcatttctgttggaatattttcagtgaaagaatttgagtaaagagttaatgcactg 116  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||  |  |||||  |||| | ||     
T  15031793 attattaacatctaaatggagtgcttccaaatcggtaagcctattcatttctgttggaatattctcagtgagagaattaaatgaaagatgtaattcgcta 15031694  T
Q  117 agttttgtcaaatttccgatagtggaaggaattggtccagagagattatttagtgaaagg 176  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  15031693 agttttgtcaaatttccgatagtggatggaattggtccagagagattattttgtgaaagg 15031634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 15010333 - 15010176
Alignment:
Q  19 tattatcatataaatggagtgcttccaaatcggtaagcctattcatttctgttggaatattttcagtgaaagaatttgagtaaagagttaatgcactgag 118  Q
    |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||  |  |||||  || | |||||||    
T  15010333 tattatcagataaatggagtacttccaaatcgataagcctattcatttctgttggaatattctcagtgagagaattaaatgaaagatgtatttcactgag 15010234  T
Q  119 ttttgtcaaatttccgatagtggaaggaattggtccagagagattatttagtgaaagg 176  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  15010233 ttttgtcaaatttccaatagtggaaggaattggtccagagagattattttgtgaaagg 15010176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 15016450 - 15016301
Alignment:
Q  17 attattatcatataaatggagtgcttccaaatcggtaagcctattcatttctgttggaatattttcagtgaaagaatttgagtaaagagttaatgcactg 116  Q
    |||||||||||| |||| |||||||| |||||||||||||||||| ||||||||||||||||| | |||||||||||||||| |||||| ||||  | ||    
T  15016450 attattatcatacaaatcgagtgctttcaaatcggtaagcctattaatttctgttggaatattcttagtgaaagaatttgagaaaagagataatctaatg 15016351  T
Q  117 agttttgtcaaatttccgatagtggaaggaattggtccagagagattatt 166  Q
    ||||||||||  ||||| |||||| ||||||||||| |||||||||||||    
T  15016350 agttttgtcatgtttccaatagtgaaaggaattggttcagagagattatt 15016301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 15001442 - 15001298
Alignment:
Q  17 attattatcatataaatggagtgcttccaaatcggtaagcctattcatttctgttggaatattttcagtgaaagaatttgagtaaagagttaatgcactg 116  Q
    |||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||  ||||||||||||| |||||  ||||  || |    
T  15001442 attattatcagataaatggagtacttccaaatctgtaagcctattcatttctgttggaatattctcacggaaagaatttgagaaaagatataatttacgg 15001343  T
Q  117 agttttgtcaaatttccgatagtggaaggaattggtccagagaga 161  Q
    |||||||||| |||||| | |||||||||||||||||||||||||    
T  15001342 agttttgtcatatttccaacagtggaaggaattggtccagagaga 15001298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 82 - 176
Target Start/End: Complemental strand, 15010054 - 15009960
Alignment:
Q  82 cagtgaaagaatttgagtaaagagttaatgcactgagttttgtcaaatttccgatagtggaaggaattggtccagagagattatttagtgaaagg 176  Q
    |||||| || |||| | ||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  15010054 cagtgagagcatttaaataaagagataatgtactgagttttgtcaaatttccaatagtggaaggaattggtccagagagattattttgtgaaagg 15009960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 82 - 176
Target Start/End: Complemental strand, 15031152 - 15031058
Alignment:
Q  82 cagtgaaagaatttgagtaaagagttaatgcactgagttttgtcaaatttccgatagtggaaggaattggtccagagagattatttagtgaaagg 176  Q
    |||||| || |||| | ||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  15031152 cagtgagagcatttaaataaagagataatgtactgagttttgtcaaatttccaatagtggaaggaattggtccagagagattattttgtgaaagg 15031058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 58 - 176
Target Start/End: Original strand, 14533563 - 14533681
Alignment:
Q  58 tattcatttctgttggaatattttcagtgaaagaatttgagtaaagagttaatgcactgagttttgtcaaatttccgatagtggaaggaattggtccaga 157  Q
    |||||||| || | ||||||||| ||||||  ||||||||| |||| | ||||| | | |||||||||||||||||||||||||||||||||||||||||    
T  14533563 tattcattactttcggaatatttccagtgagggaatttgagaaaagtgataatgaattaagttttgtcaaatttccgatagtggaaggaattggtccaga 14533662  T
Q  158 gagattatttagtgaaagg 176  Q
    ||| ||||||  |||||||    
T  14533663 gagtttattttctgaaagg 14533681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 56 - 167
Target Start/End: Complemental strand, 14503278 - 14503167
Alignment:
Q  56 cctattcatttctgttggaatattttcagtgaaagaatttgagtaaagagttaatgcactgagttttgtcaaatttccgatagtggaaggaattggtcca 155  Q
    ||||||||||||| ||||||||||| ||   ||   ||||||| ||||| |||||  | ||||||| ||||||||||||||||| |||||||||||||||    
T  14503278 cctattcatttcttttggaatatttccacctaactcatttgagaaaagatttaatatagtgagtttcgtcaaatttccgatagttgaaggaattggtcca 14503179  T
Q  156 gagagattattt 167  Q
    ||||| ||||||    
T  14503178 gagaggttattt 14503167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 92 - 167
Target Start/End: Complemental strand, 15024089 - 15024014
Alignment:
Q  92 atttgagtaaagagttaatgcactgagttttgtcaaatttccgatagtggaaggaattggtccagagagattattt 167  Q
    ||||||| |||||| ||||| || ||||||||| ||||||||||| ||||||||||||||||||||||||| ||||    
T  15024089 atttgagaaaagagataatgtaccgagttttgttaaatttccgatggtggaaggaattggtccagagagatgattt 15024014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 92 - 167
Target Start/End: Complemental strand, 15031430 - 15031355
Alignment:
Q  92 atttgagtaaagagttaatgcactgagttttgtcaaatttccgatagtggaaggaattggtccagagagattattt 167  Q
    ||||||| |||||| ||||| || ||||||||| ||||||||||| ||||||||||||||||||||||||| ||||    
T  15031430 atttgagaaaagagataatgtaccgagttttgttaaatttccgatggtggaaggaattggtccagagagatgattt 15031355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 174
Target Start/End: Original strand, 14523449 - 14523558
Alignment:
Q  65 ttctgttggaatattttcagtgaaagaatttgagtaaagagttaatgcactgagttttgtcaaatttccgatagtggaaggaattggtccagagagatta 164  Q
    |||||||||||||||| ||| || || |||||||  || || |||| |||| | ||| || |||||||||||||||||||||| |||||||||||| |||    
T  14523449 ttctgttggaatatttccagagagagcatttgagagaaaagataattcacttactttcgttaaatttccgatagtggaaggaagtggtccagagagttta 14523548  T
Q  165 tttagtgaaa 174  Q
    ||| ||||||    
T  14523549 ttttgtgaaa 14523558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 15023925 - 15023861
Alignment:
Q  112 cactgagttttgtcaaatttccgatagtggaaggaattggtccagagagattatttagtgaaagg 176  Q
    |||| ||||| || ||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  15023925 cacttagtttggttaaatttccgatagtgaaaggaattggtccagagagattattttgtgaaagg 15023861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 15031266 - 15031202
Alignment:
Q  112 cactgagttttgtcaaatttccgatagtggaaggaattggtccagagagattatttagtgaaagg 176  Q
    |||| ||||| || ||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  15031266 cacttagtttggttaaatttccgatagtgaaaggaattggtccagagagattattttgtgaaagg 15031202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 14481654 - 14481601
Alignment:
Q  115 tgagttttgtcaaatttccgatagtggaaggaattggtccagagagattattta 168  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  14481654 tgaggtttgtcaagtttccgatagtggaaggaattggtccagagagattgttta 14481601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 15016208 - 15016139
Alignment:
Q  115 tgagttttgtcaaatttccgatagtggaaggaattggtccagagagattatttagtgaaaggctaatagt 184  Q
    ||||||||||||||||||| |||||| |||||| ||||||||||| |||||||  ||||||| |||||||    
T  15016208 tgagttttgtcaaatttcctatagtgaaaggaagtggtccagagatattattttctgaaaggttaatagt 15016139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 15001205 - 15001141
Alignment:
Q  112 cactgagttttgtcaaatttccgatagtggaaggaattggtccagagagattatttagtgaaagg 176  Q
    |||| ||||| || ||||||||||||||| |||||||||||||||||||| ||||| ||||||||    
T  15001205 cacttagtttcgttaaatttccgatagtgaaaggaattggtccagagagagtattttgtgaaagg 15001141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 14467097 - 14467006
Alignment:
Q  58 tattcatttctgttggaatattttcagtgaaagaatttgagtaaagagttaatgcactgagttttgtcaaatttccgatagtggaaggaatt 149  Q
    ||||||||||| | ||||||||| ||||||  | |||||||||||||  ||| | | | ||||||||||||||||||||||| |||||||||    
T  14467097 tattcatttctatcggaatatttccagtgagggcatttgagtaaagatataacgaattaagttttgtcaaatttccgatagtagaaggaatt 14467006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 15009794 - 15009744
Alignment:
Q  126 aaatttccgatagtggaaggaattggtccagagagattatttagtgaaagg 176  Q
    ||||||||||||||| |||||||||||||||||||| ||||| ||||||||    
T  15009794 aaatttccgatagtgaaaggaattggtccagagagagtattttgtgaaagg 15009744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 15030892 - 15030842
Alignment:
Q  126 aaatttccgatagtggaaggaattggtccagagagattatttagtgaaagg 176  Q
    ||||||||||||||| |||||||||||||||||||| ||||| ||||||||    
T  15030892 aaatttccgatagtgaaaggaattggtccagagagagtattttgtgaaagg 15030842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 14533908 - 14533952
Alignment:
Q  115 tgagttttgtcaaatttccgatagtggaaggaattggtccagaga 159  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  14533908 tgagttttgtcaaatttccgatagtagaaggaagtggtccagaga 14533952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 71 - 167
Target Start/End: Complemental strand, 15036157 - 15036061
Alignment:
Q  71 tggaatattttcagtgaaagaatttgagtaaagagttaatgcactgagttttgtcaaatttccgatagtggaaggaattggtccagagagattattt 167  Q
    |||||| ||| |||||| || |||||||||||    |||| |||| | ||| || |||||||| |||||||||||||||||||||||||| ||||||    
T  15036157 tggaatttttccagtgagagcatttgagtaaattaataattcactcactttggttaaatttccaatagtggaaggaattggtccagagagtttattt 15036061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 176
Target Start/End: Complemental strand, 15024224 - 15024149
Alignment:
Q  101 aagagttaatgcactgagttttgtcaaatttccgatagtggaaggaattggtccagagagattatttagtgaaagg 176  Q
    ||||||||||  ||| | |||||| |||||||||||  ||||| |||||||||||||||||| ||||  |||||||    
T  15024224 aagagttaatttactcaattttgttaaatttccgatgatggaaagaattggtccagagagatgattttttgaaagg 15024149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 176
Target Start/End: Complemental strand, 15031565 - 15031490
Alignment:
Q  101 aagagttaatgcactgagttttgtcaaatttccgatagtggaaggaattggtccagagagattatttagtgaaagg 176  Q
    ||||||||||  ||| | |||||| |||||||||||  ||||| |||||||||||||||||| ||||  |||||||    
T  15031565 aagagttaatttactcaattttgttaaatttccgatgatggaaagaattggtccagagagatgattttttgaaagg 15031490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 15040056 - 15039975
Alignment:
Q  52 taagcctattcatttctgttggaatattttcagtgaaagaatttgagtaaagagttaatgcactgagttttgtcaaatttcc 133  Q
    ||||||||||||||||||||||||||||  |||||| |   |||||  |||||| ||||||||| | ||| || ||||||||    
T  15040056 taagcctattcatttctgttggaatattcccagtgagatcgtttgataaaagagataatgcacttactttcgttaaatttcc 15039975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 148
Target Start/End: Complemental strand, 5792 - 5695
Alignment:
Q  51 gtaagcctattcatttctgttggaatattttcagtgaaagaatttgagtaaagagttaatgcactgagttttgtcaaatttccgatagtggaaggaat 148  Q
    ||||||||||||||||| |||||||||||| |||||| || ||||||   ||||| |||   | ||||||||||||||||||| ||||||||||||||    
T  5792 gtaagcctattcatttcagttggaatatttccagtgagagcatttgaaataagagataacttagtgagttttgtcaaatttccaatagtggaaggaat 5695  T

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Target: scaffold0400; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 167
Target Start/End: Complemental strand, 12018 - 11964
Alignment:
Q  113 actgagttttgtcaaatttccgatagtggaaggaattggtccagagagattattt 167  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| | ||||||    
T  12018 actgagttttgtcaaatttccgatagtgggaggaattggtccagagggtttattt 11964  T

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Target: scaffold0400; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 11584 - 11532
Alignment:
Q  115 tgagttttgtcaaatttccgatagtggaaggaattggtccagagagattattt 167  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||| ||||||    
T  11584 tgagttttgtcaaatttccgatagtggtaggaattggtcccgagagtttattt 11532  T

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Target: scaffold0400; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 11751 - 11686
Alignment:
Q  92 atttgagtaaagagttaatgcactgagttttgtcaaatttccgatagtggaaggaattggtccaga 157  Q
    ||||||| ||||||||||  || ||||||||||||||||||| |||||| ||||||| ||||||||    
T  11751 atttgagaaaagagttaactcagtgagttttgtcaaatttcctatagtgaaaggaataggtccaga 11686  T

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Target: scaffold0400; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 11872 - 11819
Alignment:
Q  115 tgagttttgtcaaatttccgatagtggaaggaattggtccagagagattattta 168  Q
    |||||||||||||||||   |||||| ||||||||||||| ||||| |||||||    
T  11872 tgagttttgtcaaattttttatagtgcaaggaattggtcccgagagtttattta 11819  T

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Target: scaffold0365 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 148
Target Start/End: Complemental strand, 6436 - 6339
Alignment:
Q  51 gtaagcctattcatttctgttggaatattttcagtgaaagaatttgagtaaagagttaatgcactgagttttgtcaaatttccgatagtggaaggaat 148  Q
    ||||||||||||||||| |||||||||||| |||||| || ||||||   ||||| |||   | ||||||||||||||||||| ||||||||||||||    
T  6436 gtaagcctattcatttcagttggaatatttccagtgagagcatttgaaataagagataacttagtgagttttgtcaaatttccaatagtggaaggaat 6339  T

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Target: scaffold0365; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 167
Target Start/End: Complemental strand, 12661 - 12607
Alignment:
Q  113 actgagttttgtcaaatttccgatagtggaaggaattggtccagagagattattt 167  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| | ||||||    
T  12661 actgagttttgtcaaatttccgatagtgggaggaattggtccagagggtttattt 12607  T

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Target: scaffold0365; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 12227 - 12175
Alignment:
Q  115 tgagttttgtcaaatttccgatagtggaaggaattggtccagagagattattt 167  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||| ||||||    
T  12227 tgagttttgtcaaatttccgatagtggtaggaattggtcccgagagtttattt 12175  T

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Target: scaffold0365; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 12394 - 12329
Alignment:
Q  92 atttgagtaaagagttaatgcactgagttttgtcaaatttccgatagtggaaggaattggtccaga 157  Q
    ||||||| ||||||||||  || ||||||||||||||||||| |||||| ||||||| ||||||||    
T  12394 atttgagaaaagagttaactcagtgagttttgtcaaatttcctatagtgaaaggaataggtccaga 12329  T

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Target: scaffold0365; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 12515 - 12462
Alignment:
Q  115 tgagttttgtcaaatttccgatagtggaaggaattggtccagagagattattta 168  Q
    |||||||||||||||||   |||||| ||||||||||||| ||||| |||||||    
T  12515 tgagttttgtcaaattttttatagtgcaaggaattggtcccgagagtttattta 12462  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 37025857 - 37025817
Alignment:
Q  115 tgagttttgtcaaatttccgatagtggaaggaattggtcca 155  Q
    ||||||||||||| ||||| |||||||||||||||| ||||    
T  37025857 tgagttttgtcaagtttccaatagtggaaggaattgatcca 37025817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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