View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19590_low_7 (Length: 448)
Name: NF19590_low_7
Description: NF19590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19590_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Original strand, 36312377 - 36312799
Alignment:
| Q |
19 |
ggtattcttcaaattctcccattagaagaatctttctcaaggaatctcttgacagagaaacaatatgcagaaaagcagacatagcatcagccaatgaaga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36312377 |
ggtattcttcaaattctcccattagaagaatctttctcaaggaatctcttgacagagaaacaatatgcagaaaagcagacatagcatcagccaatgaaga |
36312476 |
T |
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| Q |
119 |
caaattgggaggcaaaatctttaactcatgtacactattataaagcttctcattgatcttcttaattatctcaggcaaagtttttgaaataatcatagct |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36312477 |
taaattgggaggcaaaatctttaactcatgtacactattataaagcttctcattgatcttcttaattatctcaggcaaagtttttgaaataatcatagct |
36312576 |
T |
|
| Q |
219 |
tgcacatgaacaagcttctgagccaaaacaagaataccaacaatggatttgtcaatcttagaaagaagtgagtgagactcaaacaacttatgctcttcat |
318 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36312577 |
tgcacatgaacaagcttctgagccaaaacaggaataccaacaatggatttgtcaatcttagaaagaagtgagtgagactcaaacaacttatgctcttcat |
36312676 |
T |
|
| Q |
319 |
ttctagcttcttcataggattcctccccgatgcgatttctcacacaaacatagcccaaaccaatgttaacatcatcagcagttactttctccaacaaacc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36312677 |
ttctagcttcttcataggattcctccccgatgcgatttctcacacaaacatagcccaaaccaatgttaacatcatcagcagttactttctccaacaaacc |
36312776 |
T |
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| Q |
419 |
ttcaggtgatttatcagcctttg |
441 |
Q |
| |
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| T |
36312777 |
ttcaggtgatttatcagcctttg |
36312799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 42 - 433
Target Start/End: Original strand, 36289917 - 36290308
Alignment:
| Q |
42 |
agaagaatctttctcaaggaatctcttgacagagaaacaatatgcagaaaagcagacatagcatcagccaatgaagacaaattgggaggcaaaatcttta |
141 |
Q |
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|||||||||||| | | |||||||| |||| | || |||||||| ||||||| |||||||||||| | ||||| ||||| | ||| ||| ||| || |
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| T |
36289917 |
agaagaatctttttgagagaatctctagacaaaccaagaatatgcatgaaagcagtcatagcatcagcaacagaagataaattagcaggtaaattctcta |
36290016 |
T |
|
| Q |
142 |
actcatgtacactattataaagcttctcattgatcttcttaattatctcaggcaaagtttttgaaataatcatagcttgcacatgaacaagcttctgagc |
241 |
Q |
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|||||| | || || | |||||||||||| |||||||| || ||||| |||||||||||||| |||||||||||||| || ||||||||||||||||| |
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| T |
36290017 |
actcatttgcattagaagcaagcttctcattaatcttcttgatgatctctggcaaagtttttgagataatcatagcttgaacctgaacaagcttctgagc |
36290116 |
T |
|
| Q |
242 |
caaaacaagaataccaacaatggatttgtcaatcttagaaagaagtgagtgagactcaaacaacttatgctcttcatttctagcttcttcataggattcc |
341 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| | ||||| |||||| |||||||||| || |
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| T |
36290117 |
taaaacaggaataccaacaatggttttgtcaatcttagaaagaagtgagtgagactcaaacagcttttcttcttccagtctagcatcttcataggtctca |
36290216 |
T |
|
| Q |
342 |
tccccgatgcgatttctcacacaaacatagcccaaaccaatgttaacatcatcagcagttactttctccaacaaaccttcaggtgatttatc |
433 |
Q |
| |
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|| || || || |||| |||||| ||||| || | ||| ||||||||||||||||| || || ||||||||||| |||||||| |||||||| |
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| T |
36290217 |
tctccaattcggtttcgcacacagacataacctagaccgatgttaacatcatcagcggtaaccttctccaacaatccttcaggagatttatc |
36290308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 441
Target Start/End: Complemental strand, 15997323 - 15997268
Alignment:
| Q |
386 |
aacatcatcagcagttactttctccaacaaaccttcaggtgatttatcagcctttg |
441 |
Q |
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||||||||||||||| |||||||| ||||| |||||| | ||||||| |||||||| |
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| T |
15997323 |
aacatcatcagcagtaactttctcaaacaatccttcaagagatttatgagcctttg |
15997268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 441
Target Start/End: Original strand, 33579675 - 33579730
Alignment:
| Q |
386 |
aacatcatcagcagttactttctccaacaaaccttcaggtgatttatcagcctttg |
441 |
Q |
| |
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||||||||||||||| |||||||| ||||| |||||| | ||||||| |||||||| |
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| T |
33579675 |
aacatcatcagcagtaactttctcaaacaatccttcaagagatttatgagcctttg |
33579730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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