View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19591_high_3 (Length: 237)
Name: NF19591_high_3
Description: NF19591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19591_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2332563 - 2332342
Alignment:
| Q |
1 |
gtgttgagtgtcatagttctttttagtagacttgtaagatatgactaagaaaaaatgaacttaagaaggacttgtagagagtagaagaaacacaaattac |
100 |
Q |
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| T |
2332563 |
gtgttgagtgtcatagttctttttagtagacttgtaagatatgactaagaaaaaatgaacttaagtaggacttgtagagagtagaagaaacacaaattac |
2332464 |
T |
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| Q |
101 |
tatttcaaatataactaatagatgattgatgcggtaattgatgatgattaattcaagttgacaaactaactctacatctatgaatattgttattgagaaa |
200 |
Q |
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| T |
2332463 |
tatttcaaatagaactaatagatggttgatgcggtaattgatgatgattaattcaagttgacaaactaactctacatctatgaatattgttattgagaaa |
2332364 |
T |
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| Q |
201 |
aatcagcaaccaccattttact |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
2332363 |
aatcagcaaccaccattttact |
2332342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 201
Target Start/End: Complemental strand, 2322268 - 2322201
Alignment:
| Q |
134 |
gtaattgatgatgattaattcaagttgacaaactaactctacatctatgaatattgttattgagaaaa |
201 |
Q |
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|||||||||||||||||| ||| |||||||||||| ||||| | || || || |||||||| |||||| |
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| T |
2322268 |
gtaattgatgatgattaactcaggttgacaaactagctctaaaactgtggatcttgttattaagaaaa |
2322201 |
T |
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