View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19592_high_1 (Length: 662)

Name: NF19592_high_1
Description: NF19592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19592_high_1
NF19592_high_1
[»] chr2 (1 HSPs)
chr2 (9-646)||(35783389-35784027)


Alignment Details
Target: chr2 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 9 - 646
Target Start/End: Original strand, 35783389 - 35784027
Alignment:
Q  9 taatactcgaagttctttatgcaaatctcattgcttgcaaatccgagcgtgttactgtaagtctatgttaagatatataaatatgtaccatgattcagac 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35783389 taatactcgaagttctttatgcaaatctcattgcttgcaaatccgagcgtgttactgtaagtctatgttaagatatataaatatgtaccatgattaagac 35783488  T
Q  109 tgcattctttttatggcttgtgaaacttaaatattatcaggcaatgagatgatctaatgatactttattacatatttttgtattaattacatgctgcagg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  35783489 tgcattctttttatggcttgtgaaacttaaatattatcaggcaatgagatgatctaatgatacttaattacatatttttgtattaattacatgctacagg 35783588  T
Q  209 agattagtataggaattattgggaaccttgcttgccatgaagttccactgaatcaaatagtgtcgacaaaaggactgattgagataattgtggaaaaatt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35783589 agattagtataggaattattgggaaccttgcttgccatgaagttccattgaatcaaatagtctcgacaaaaggactgattgagataattgtggaaaaatt 35783688  T
Q  309 gtttctagatgatcctcaatgcctatgtgaaacatgtcggtatgatacttttttgacacatgtaaatgtagttcttctctctttcatttttgttaaggat 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35783689 gtttctagatgatcctcaatgcctatgtgaaacatgtcggtatgatacttttttgacacatgtaaatgtacttcttctctctttcatttttgttaaggat 35783788  T
Q  409 taaattacctgtttcgttactatttccgtattgttatccctgnnnnnnnnnnnnnnnnnatcttctgattctattatacattatttttgttggaaagaaa 508  Q
    ||||||||||||||||||||||||||||||||| ||||||||                 |||||||||||||||||||||||||||||||||||||||||    
T  35783789 taaattacctgtttcgttactatttccgtattgctatccctgttttttgtttttgttttatcttctgattctattatacattatttttgttggaaagaaa 35783888  T
Q  509 cacctgctatataaaatgttttgactcttttcttttcatattaaaaaatgtgtatata-ttcatgctgatccaattatgccttatctattctgtccattt 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  35783889 cacctgctatataaaatgttttgactcttttcttttcatattaaaaaatgtgtatatatttcatgctgatccaattatgccttatctattctgtccattt 35783988  T
Q  608 ccttttgaattctttatttccttgatgaacttgcctgtt 646  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35783989 ccttttgaattctttatttccttgatgaacttgcctgtt 35784027  T

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