View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19592_high_16 (Length: 204)
Name: NF19592_high_16
Description: NF19592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19592_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 43437031 - 43436963
Alignment:
| Q |
13 |
gagatgaagagagatgtgttatgagagtaataaggtggtgaatgtttgtttaaagagaggatatagtgc |
81 |
Q |
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| T |
43437031 |
gagaggaagagagatgtgttatgagagtaataaggtggtgaatgtttgtttaaagagaggatatagtgc |
43436963 |
T |
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Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 43436941 - 43436897
Alignment:
| Q |
95 |
gtattagcaaaagcatgagaatgttgtacagaaaagaagcaggag |
139 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43436941 |
gtattagcaaaagcatgagaatgttgtacagaaaagaagcaggag |
43436897 |
T |
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