View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19592_high_6 (Length: 346)
Name: NF19592_high_6
Description: NF19592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19592_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 47881464 - 47881791
Alignment:
| Q |
1 |
tatccttttggcaagaaggtgttgaatcccaagattaaatttgtatgccctttaagcagcaccttcactctttctacgagaccacttgtataaattctcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
47881464 |
tatccttttggcaagaaggtgttgaatcccaagattaaatttgtatgccctttaagcagcaccttcactctttctacgagaccaccagtatcaattctcc |
47881563 |
T |
|
| Q |
101 |
tagccttgaattctttcaaaacatttaaaaattcatcatacttttccatctcatcttgaaactcaactcttactgctttcagatatgctagtgccatttc |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47881564 |
tagccttgaattctttcataacatttaaaaattcatcatacttttccatctcatcttgaaactcaactcttactgctttcagatatgctagtgccatttc |
47881663 |
T |
|
| Q |
201 |
agtagtcaagtgcttacttgaaccctaattgaacatgaagagaaccaagaacaaaataaattgctttcagataaattcattcagaaaaataaattgaaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47881664 |
agtagtcaagtgcttacttgaaccctaattgaacatgaagagaatcaagaacaaaataaattgctttcagataaattcattcagaaaaataaattgaaag |
47881763 |
T |
|
| Q |
301 |
aagattagagtgaaggaggggaggagaa |
328 |
Q |
| |
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|||||||||||||||||||| ||||||| |
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| T |
47881764 |
aagattagagtgaaggagggaaggagaa |
47881791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 4 - 164
Target Start/End: Complemental strand, 47879574 - 47879414
Alignment:
| Q |
4 |
ccttttggcaagaaggtgttgaatcccaagattaaatttgtatgccctttaagcagcaccttcactctttctacgagaccacttgtataaattctcctag |
103 |
Q |
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|||||||||| |||| |||||||||| || ||||||||| |||||||||||| || |||||| |||| ||| || |||| |||||| ||||||| ||| |
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| T |
47879574 |
ccttttggcacgaagatgttgaatcctaaaattaaatttttatgccctttaaacaaatccttcaatcttgctatgacaccatttgtatcaattctcatag |
47879475 |
T |
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| Q |
104 |
ccttgaattctttcaaaacatttaaaaattcatcatacttttccatctcatcttgaaactc |
164 |
Q |
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||||||| || |||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47879474 |
ccttgaaatccttcataacatttaaaaattcatcatacttttctatctcatcttgaaactc |
47879414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 7 - 176
Target Start/End: Complemental strand, 47879808 - 47879639
Alignment:
| Q |
7 |
tttggcaagaaggtgttgaatcccaagattaaatttgtatgccctttaagcagcaccttcactctttctacgagaccacttgtataaattctcctagcct |
106 |
Q |
| |
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||||||| ||| |||| ||||| || |||||||||||||||||||||| || |||||||||||| |||||| |||||| ||||||| ||||| |
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| T |
47879808 |
tttggcagaaagttgttaaatccaaaaattaaatttgtatgccctttaaatagttccttcactcttttcgcgagacattttgtatcaattctctcagcct |
47879709 |
T |
|
| Q |
107 |
tgaattctttcaaaacatttaaaaattcatcatacttttccatctcatcttgaaactcaactcttactgc |
176 |
Q |
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|| | || || | | | || | ||||||| ||||||||||| |||||| ||||||||||||| ||||||| |
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| T |
47879708 |
tgcaatccttaacagctttcacaaattcaacatacttttccctctcatattgaaactcaacttttactgc |
47879639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 45191250 - 45191188
Alignment:
| Q |
7 |
tttggcaagaaggtgttgaatcccaagattaaatttgtatgccctttaagcagcaccttcact |
69 |
Q |
| |
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||||||| ||||| ||||| ||||| |||||||||| |||||||||||||||| |||||||| |
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| T |
45191250 |
tttggcaggaaggcattgaaccccaaaattaaatttgcatgccctttaagcagccccttcact |
45191188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 47311095 - 47311033
Alignment:
| Q |
103 |
gccttgaattctttcaaaacatttaaaaattcatcatacttttccatctcatcttgaaactca |
165 |
Q |
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|||||||| ||||||| || | ||||||||| |||||||||||| ||| ||||||||||||| |
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| T |
47311095 |
gccttgaaatctttcataagttctaaaaattcttcatacttttccctcttatcttgaaactca |
47311033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 532614 - 532749
Alignment:
| Q |
10 |
ggcaagaaggtgttgaatcccaagattaaatttgtatgccctttaagcagcaccttcactctttctacgagaccacttgtataaattctcctagccttga |
109 |
Q |
| |
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||||||||| ||||||||||||| ||||||| |||||||||||||| || |||| |||||||| ||| ||||||||||| |||||| | |||||||| |
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| T |
532614 |
ggcaagaagttgttgaatcccaaaattaaatctgtatgccctttaaacaaatccttgactctttccgcgacaccacttgtatcaattctacaagccttga |
532713 |
T |
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| Q |
110 |
attctttcaaaacatttaaaaattcatcatactttt |
145 |
Q |
| |
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| T |
532714 |
aatccttcataagttttaaaaactcggcatactttt |
532749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 565197 - 565332
Alignment:
| Q |
10 |
ggcaagaaggtgttgaatcccaagattaaatttgtatgccctttaagcagcaccttcactctttctacgagaccacttgtataaattctcctagccttga |
109 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| |||||||||||||| || |||| |||||||| ||| ||||||||||| |||||| | |||||||| |
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| T |
565197 |
ggcaagaagatgttgaatcccaaaattaaatctgtatgccctttaaacaaacccttgactctttccgcgacaccacttgtatcaattctacaagccttga |
565296 |
T |
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| Q |
110 |
attctttcaaaacatttaaaaattcatcatactttt |
145 |
Q |
| |
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| || |||| || |||||||| || ||||||||| |
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| T |
565297 |
aatccttcataagttttaaaaactcggcatactttt |
565332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 168
Target Start/End: Complemental strand, 14961519 - 14961367
Alignment:
| Q |
15 |
gaaggtgttgaatcccaagattaaatttgtatgccctttaagcagcaccttcactctttctacgagaccacttgtataaattctcctagccttgaattct |
114 |
Q |
| |
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|||| ||||||||||||| |||| || ||||||||||||||||||| |||| |||||| | ||| ||| ||| ||| |||||| || ||||||| ||| |
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| T |
14961519 |
gaagatgttgaatcccaaaattagatctgtatgccctttaagcagctccttgactcttgcagcgacacctcttatatcaattct-ttatccttgaaatct |
14961421 |
T |
|
| Q |
115 |
ttcaaaacatttaaaaattcatcatacttttccatctcatcttgaaactcaact |
168 |
Q |
| |
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|| | || |||||||| |||| ||| |||||| ||| |||||||||| ||||| |
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| T |
14961420 |
tttatgacttttaaaaagtcattataattttccctcttatcttgaaacgcaact |
14961367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 574929 - 574982
Alignment:
| Q |
7 |
tttggcaagaaggtgttgaatcccaagattaaatttgtatgccctttaagcagc |
60 |
Q |
| |
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||||||||||||| |||||||||||| ||||||| |||||||||| ||||||| |
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| T |
574929 |
tttggcaagaaggcgttgaatcccaaaattaaatccgtatgcccttgaagcagc |
574982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 14961295 - 14961243
Alignment:
| Q |
7 |
tttggcaagaaggtgttgaatcccaagattaaatttgtatgccctttaagcagc |
60 |
Q |
| |
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||||||| |||||||||||||||||| ||||| |||||||||||| ||||||| |
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| T |
14961295 |
tttggcaggaaggtgttgaatcccaa-attaagtttgtatgccctcgaagcagc |
14961243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 26214651 - 26214748
Alignment:
| Q |
1 |
tatccttttggcaagaaggtgttgaatcccaagattaaatttgtatgccctttaagcagcaccttcactctttctacgagaccacttgtataaattct |
98 |
Q |
| |
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||||| |||||||| |||||||| |||||||| || |||| | |||||||||||| |||| ||||||||||||||| || |||| ||||| |||||| |
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| T |
26214651 |
tatccctttggcaaaaaggtgttaaatcccaaaatcaaatctttatgccctttaaacagctccttcactctttctatgacaccagctgtatcaattct |
26214748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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