View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19592_high_9 (Length: 300)
Name: NF19592_high_9
Description: NF19592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19592_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 27518238 - 27517958
Alignment:
| Q |
16 |
agaagtaatatgaacaaaatctaaatcaccggaagaggtagggactgtctcttgagcatcgacacattgacgttgattagtagtacaataacacttaaac |
115 |
Q |
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| T |
27518238 |
agaagtaatatgaacaaaatctaaatcaccggaagaggtaggaactgtctcttgagcatcaacacattgacgttgattagtagtacaataacacttaaac |
27518139 |
T |
|
| Q |
116 |
tcgggatgactatgtgactatggaggtctgtgagtagagatagatcattcaaatagaggaatatgtaccacatgattactgacatatattagttttagaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
27518138 |
tcgggatgactatgtgactatggaggtctgtgagtagagatagatcattcaaatagaggaatatgtaccacatgattactaacatatatatgttttagaa |
27518039 |
T |
|
| Q |
216 |
tctgatgtacctggtgtcacaaggtaaggtgtatcatcgaagaaagtaacatctgtcgaaatataaaaatgacgtgtaaat |
296 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27518038 |
tctgatgtacctggtgtcacaaagtaaggtgtatcatcaaagaaagtaacatctgtcgaaacataaaaatgacgtgtaaat |
27517958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 22504472 - 22504512
Alignment:
| Q |
243 |
ggtgtatcatcgaagaaagtaacatctgtcgaaatataaaa |
283 |
Q |
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| T |
22504472 |
ggtgtatcctcgaagaaagtaacatctgctgaaatataaaa |
22504512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 46595526 - 46595566
Alignment:
| Q |
243 |
ggtgtatcatcgaagaaagtaacatctgtcgaaatataaaa |
283 |
Q |
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| T |
46595526 |
ggtgtatcctcgaagaaagtaacatctgctgaaatataaaa |
46595566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 43735271 - 43735215
Alignment:
| Q |
243 |
ggtgtatcatcgaagaaagtaacatctgtcgaaatataaaaatgacgtgtaaatgga |
299 |
Q |
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| T |
43735271 |
ggtgtatcctcgaagaaagtaacatctgctgaaatataaaagcgacgtgtagatgga |
43735215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 300
Target Start/End: Complemental strand, 36999229 - 36999140
Alignment:
| Q |
211 |
tagaatctgatgtacctggtgtcacaaggtaaggtgtatcatcgaagaaagtaacatctgtcgaaatataaaaatgacgtgtaaatggac |
300 |
Q |
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| T |
36999229 |
tagaatctgatgtacttggtgtggtaaagaaaggtgtatcctcaaagaaagtaacatctgcataaacataaaaacgatgtgtagatggac |
36999140 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 40544532 - 40544588
Alignment:
| Q |
243 |
ggtgtatcatcgaagaaagtaacatctgtcgaaatataaaaatgacgtgtaaatgga |
299 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||| |||||||| ||||| |
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| T |
40544532 |
ggtgtatcctcgaagaaagtaacatctgctgaaatataaaagcgacgtgtagatgga |
40544588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 19895 - 19839
Alignment:
| Q |
243 |
ggtgtatcatcgaagaaagtaacatctgtcgaaatataaaaatgacgtgtaaatgga |
299 |
Q |
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| T |
19895 |
ggtgtatcctcgaagaaagtaacatctgctgaaatataaaagcgacgtgtagatgga |
19839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 38504587 - 38504531
Alignment:
| Q |
243 |
ggtgtatcatcgaagaaagtaacatctgtcgaaatataaaaatgacgtgtaaatgga |
299 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||| |||||||| ||||| |
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| T |
38504587 |
ggtgtatcctcgaagaaagtaacatctgctgaaatataaaagcgacgtgtagatgga |
38504531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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