View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19592_low_12 (Length: 237)
Name: NF19592_low_12
Description: NF19592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19592_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 25064893 - 25064672
Alignment:
| Q |
1 |
tacacttatttagcatcatagtcttnnnnnnntttgttttaagagatttattgatacttcataaccaacttgtgtctttctagccactttcaattttatt |
100 |
Q |
| |
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|||| |||||||||||||||||||| || |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25064893 |
tacatttatttagcatcatagtcttaaaaattttagttttaagagatttctttatacttcataaccaacttgtgtctttctagccactttcaattttatt |
25064794 |
T |
|
| Q |
101 |
ttttacttaatgaaaagttgtatttaactgtctctatttctaataccatgccacttattcttgagcgttttgtggatcataaactatcacaagaacattc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25064793 |
ttttacttaatgaaaagttgtatttaactgtctatatttctaataccatgccacttattcttgagcgttttgtggatcataaactatcacaagaacattc |
25064694 |
T |
|
| Q |
201 |
ccaaccacagtcttcatgttgt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
25064693 |
ccaaccacagtcttcatgttgt |
25064672 |
T |
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