View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19592_low_14 (Length: 233)
Name: NF19592_low_14
Description: NF19592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19592_low_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 2442304 - 2442071
Alignment:
| Q |
1 |
ttgttaagttataaattcaacaagacattcaaaatagttgttannnnnnnnnn-aatggcattcaaaatagttgttattgaaaattgtaaaaagaagaaa |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2442304 |
ttgttaagttataaattcaacaagacattcaaaatagttgttatttttttttttaatggcattcaaaatagttgttattgaaaattgtaaaaagaagaaa |
2442205 |
T |
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| Q |
100 |
aatgtcggagggagttcatttatagttgctcaccagtcgcaacttcaaatagaagtgtaattttataatcagaggggagaacaatatggtttaagcagcc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2442204 |
aatgtcggagggagttcatttatagttgctcaccagtcgcaacttcaaatagaagtgtaattttataatcagaggggagaacaatatggtttaagcagct |
2442105 |
T |
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| Q |
200 |
ctcaaggcaggggagtgtaatctactcttttctt |
233 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
2442104 |
ctcaaggcagaggagtgtaatctactcttttctt |
2442071 |
T |
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