View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19592_low_15 (Length: 219)

Name: NF19592_low_15
Description: NF19592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19592_low_15
NF19592_low_15
[»] scaffold2156 (1 HSPs)
scaffold2156 (13-203)||(284-474)
[»] scaffold0640 (1 HSPs)
scaffold0640 (13-203)||(4856-5046)
[»] chr3 (26 HSPs)
chr3 (13-203)||(17941200-17941390)
chr3 (13-152)||(19392593-19392732)
chr3 (13-155)||(18115421-18115563)
chr3 (19-152)||(18143710-18143843)
chr3 (13-155)||(19460988-19461130)
chr3 (33-200)||(24493778-24493942)
chr3 (13-203)||(25462506-25462693)
chr3 (13-152)||(18102898-18103037)
chr3 (13-159)||(19333453-19333599)
chr3 (13-158)||(16676669-16676814)
chr3 (13-152)||(18164618-18164757)
chr3 (13-151)||(19436336-19436474)
chr3 (15-152)||(19413660-19413797)
chr3 (13-152)||(19375150-19375289)
chr3 (13-152)||(14896795-14896934)
chr3 (13-152)||(19350865-19351004)
chr3 (13-202)||(18015562-18015745)
chr3 (13-152)||(17728085-17728224)
chr3 (13-152)||(18022264-18022403)
chr3 (13-152)||(18146286-18146425)
chr3 (13-152)||(19029314-19029453)
chr3 (13-136)||(19399176-19399299)
chr3 (13-178)||(18107908-18108072)
chr3 (13-152)||(19419451-19419590)
chr3 (13-153)||(19380361-19380501)
chr3 (171-203)||(17949438-17949470)
[»] chr6 (1 HSPs)
chr6 (16-203)||(13667228-13667415)
[»] chr8 (1 HSPs)
chr8 (16-152)||(8458944-8459080)
[»] chr4 (1 HSPs)
chr4 (13-67)||(15531819-15531873)


Alignment Details
Target: scaffold2156 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: scaffold2156
Description:

Target: scaffold2156; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 474 - 284
Alignment:
Q  13 gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa 112  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  474 gtgagatgaatctttgtattctagaacttgagtttttgagttacttggatttgagctacaatgattttgacgttataagagttccaatcactcaacacaa 375  T
Q  113 catcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttct 203  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  374 catcacacgttcatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttct 284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 4856 - 5046
Alignment:
Q  13 gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa 112  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4856 gtgagatgaatctttgtattctagaacttgagtttttgagttacttggatttgagctacaatgattttgacgttataagagttccaatcactcaacacaa 4955  T
Q  113 catcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttct 203  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4956 catcacacgttcatctaaacttgtctaccttgacttagcccccctcatttttgataaaactcttcacatggataatcttcattggctttct 5046  T

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Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 17941200 - 17941390
Alignment:
Q  13 gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa 112  Q
    |||||||||||||||||||||| ||||||||| || | ||||| |||||||||||  | ||| | ||||| || |||||| |||||  || |||||||||    
T  17941200 gtgagatgaatctttgtattcttgaacttgagtttctcagttatttggatttgagtgataataaatttgatgtgataagaattccatccattcaacacaa 17941299  T
Q  113 catcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttct 203  Q
    |||||||| ||  |||||||||||| ||||| |||||||| || ||| ||||||||| |||||||||||||||||||||||||||||||||    
T  17941300 catcacacattcctctaaacttgtccaccttaacttatcctccttcaattttgataatactcttcacatggataatcttcattggctttct 17941390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 19392593 - 19392732
Alignment:
Q  13 gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa 112  Q
    ||||||||||||||||||||||| |||||||| || | ||||||||||||||||||   |||||||||||||| |||||| |||||| || ||||| |||    
T  19392593 gtgagatgaatctttgtattctacaacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaa 19392692  T
Q  113 catcacacgtttatctaaacttgtctaccttgacttatcc 152  Q
    |||||| | || ||||||||||| ||||||||||||||||    
T  19392693 catcacgcattcatctaaacttgcctaccttgacttatcc 19392732  T

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Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 155
Target Start/End: Original strand, 18115421 - 18115563
Alignment:
Q  13 gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa 112  Q
    |||||||||||||||||||||||||||||||| || | |||||||||||||||||||  ||||||||||| || |||||| |||||  || |||||||||    
T  18115421 gtgagatgaatctttgtattctagaacttgagtttctcagttacttggatttgagctcaaatgattttgatgtgataagatttccatccattcaacacaa 18115520  T
Q  113 catcacacgtttatctaaacttgtctaccttgacttatccccc 155  Q
    | |||||| || |||||| ||| || |||||||||||||||||    
T  18115521 cctcacacattcatctaaccttttccaccttgacttatccccc 18115563  T

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Target: chr3; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 18143710 - 18143843
Alignment:
Q  19 tgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcac 118  Q
    |||||||||||||||||||||||||| || | ||||||||||||||||| | ||||||||||||  | |||||| |||||  || |||||||||||||||    
T  18143710 tgaatctttgtattctagaacttgagtttcttagttacttggatttgagattcaatgattttgatatgataagaattccatccattcaacacaacatcac 18143809  T
Q  119 acgtttatctaaacttgtctaccttgacttatcc 152  Q
    || ||  |||||||||||||||||||||||||||    
T  18143810 acattcctctaaacttgtctaccttgacttatcc 18143843  T

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Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 155
Target Start/End: Original strand, 19460988 - 19461130
Alignment:
Q  13 gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa 112  Q
    |||||||||||||||||||||||||||||||| || | |||||||||||||||||    ||||| ||||| || |||||| |||||  || |||||||||    
T  19460988 gtgagatgaatctttgtattctagaacttgagtttctcagttacttggatttgagtctgaatgaatttgatgtgataagatttccatccattcaacacaa 19461087  T
Q  113 catcacacgtttatctaaacttgtctaccttgacttatccccc 155  Q
    |||||||| || |||||| ||| ||||||||||||||||||||    
T  19461088 catcacacattcatctaaccttttctaccttgacttatccccc 19461130  T

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Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 200
Target Start/End: Complemental strand, 24493942 - 24493778
Alignment:
Q  33 ctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtttatctaaac 132  Q
    |||||||||||| || | ||||||||||| |||||| | || ||||||||  | |||||  |||||  || |||| |||||||||||| || ||||||||    
T  24493942 ctagaacttgagtttcttagttacttggacttgagcgataacgattttgatttgataagtattccaaccattcaaaacaacatcacacattcatctaaac 24493843  T
Q  133 ttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctt 200  Q
    |||||||||||||||||||||||||||  |||| |   ||||||||||||||||||||||||||||||    
T  24493842 ttgtctaccttgacttatcccccctcagctttggt---actcttcacatggataatcttcattggctt 24493778  T

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Target: chr3; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 25462506 - 25462693
Alignment:
Q  13 gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa 112  Q
    ||||||||||||| ||| |||||||||||||| || | |||||||||||||| ||  | ||||| ||| || | |||||  |||||| |  |||||||||    
T  25462506 gtgagatgaatctatgtgttctagaacttgagtttctcagttacttggatttaagtgataatgaatttaacatcataagtattccagcctttcaacacaa 25462605  T
Q  113 catcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttct 203  Q
    |||||||| || ||||||||||| ||| |||||||||||||| ||||   |   ||| |||||||||||||||||||||||||||||||||    
T  25462606 catcacacattcatctaaacttgactatcttgacttatccccgctcaccct---taacactcttcacatggataatcttcattggctttct 25462693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 18102898 - 18103037
Alignment:
Q  13 gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa 112  Q
    |||| ||||||||||||||||| | ||||||| || | | |||||||||||||||||  ||| ||||||| || |||||| |||||  || |||||||||    
T  18102898 gtgatatgaatctttgtattcttggacttgagtttctcaattacttggatttgagctggaatcattttgatgtgataagaattccatccattcaacacaa 18102997  T
Q  113 catcacacgtttatctaaacttgtctaccttgacttatcc 152  Q
    |||||||| || ||||||||||||||||||||||||||||    
T  18102998 catcacacattcatctaaacttgtctaccttgacttatcc 18103037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 19333453 - 19333599
Alignment:
Q  13 gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa 112  Q
    |||||||||||||||||||||||||||||||| || | |||||||||||||||||    ||||  |||||||| |||| | |||||  || || ||||||    
T  19333453 gtgagatgaatctttgtattctagaacttgagtttctcagttacttggatttgagtctgaatgtatttgacgtgataataattccatccattccacacaa 19333552  T
Q  113 catcacacgtttatctaaacttgtctaccttgacttatcccccctca 159  Q
    |||||||| || |||||||||||| |||||||||||||||| |||||    
T  19333553 catcacacattcatctaaacttgtataccttgacttatccctcctca 19333599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 16676669 - 16676814
Alignment:
Q  13 gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa 112  Q
    |||||||||||||||||||||||||||||||| || | | |||||||||||||||||  ||||| |||||| | |||||| |||||  || |||||| ||    
T  16676669 gtgagatgaatctttgtattctagaacttgagtttctaatttacttggatttgagctggaatgaatttgacctaataagaattccatccattcaacaaaa 16676768  T
Q  113 catcacacgtttatctaaacttgtctaccttgacttatcccccctc 158  Q
    | |||||| |  |||||| ||||||||||||||||||||| |||||    
T  16676769 cctcacacatgcatctaaccttgtctaccttgacttatcctccctc 16676814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 18164618 - 18164757
Alignment:
Q  13 gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa 112  Q
    |||||||||||||||||||||||||||||||| || | ||| |||||||||||||    ||||||||||| || |||||| || ||   | |||||||||    
T  18164618 gtgagatgaatctttgtattctagaacttgagtttctcagtcacttggatttgagtcttaatgattttgatgtgataagaattacatcaattcaacacaa 18164717  T
Q  113 catcacacgtttatctaaacttgtctaccttgacttatcc 152  Q
    | |||||| || ||||||||||||||||||||||||||||    
T  18164718 cttcacacattcatctaaacttgtctaccttgacttatcc 18164757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 19436336 - 19436474
Alignment:
Q  13 gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa 112  Q
    ||||||||||||||||||||||| |||||||| || | |||||||||||||||||    ||||||||||| || |||||| || ||  || |||||||||    
T  19436336 gtgagatgaatctttgtattctaaaacttgagtttcttagttacttggatttgagtgtgaatgattttgatgtgataagaatttcatccattcaacacaa 19436435  T
Q  113 catcacacgtttatctaaacttgtctaccttgacttatc 151  Q
     ||||||| || |||||||||| ||||||||||||||||    
T  19436436 tatcacacattcatctaaacttctctaccttgacttatc 19436474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 19413660 - 19413797
Alignment:
Q  15 gagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaaca 114  Q
    |||||||||||||||||||||||||||||| || | |||||||||||||||||| ||||| ||||||  |  |||||| |||||   | | ||||||| |    
T  19413660 gagatgaatctttgtattctagaacttgagtttctcagttacttggatttgagccacaattattttggtgagataagaattccaactattaaacacaata 19413759  T
Q  115 tcacacgtttatctaaacttgtctaccttgacttatcc 152  Q
    |||||| || |||||||||||| |||||||||||||||    
T  19413760 tcacacattcatctaaacttgtttaccttgacttatcc 19413797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 19375150 - 19375289
Alignment:
Q  13 gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa 112  Q
    ||||||||||||||| |||||||||||||||| || | ||||||||||||||||| | |||||| |||||||| |||||| ||||   || |||||||||    
T  19375150 gtgagatgaatctttatattctagaacttgagtttctcagttacttggatttgagtttcaatgaatttgacgtgataagaattccgtccattcaacacaa 19375249  T
Q  113 catcacacgtttatctaaacttgtctaccttgacttatcc 152  Q
    | |||||| || |||||| ||| | | |||||||||||||    
T  19375250 cttcacacattcatctaaccttttgttccttgacttatcc 19375289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 152
Target Start/End: Complemental strand, 14896934 - 14896795
Alignment:
Q  13 gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa 112  Q
    ||||||||| |||||||||||| ||||| ||| || | |||||||| ||||||||    ||| ||||||| || |||||  |||||||||||||||||||    
T  14896934 gtgagatgagtctttgtattctcgaactggagtttctcagttacttagatttgagtatgaatcattttgatgtgataagtattccagtcactcaacacaa 14896835  T
Q  113 catcacacgtttatctaaacttgtctaccttgacttatcc 152  Q
    |||||||| || |||||  ||| |||||||||||||||||    
T  14896834 catcacacattcatctagccttttctaccttgacttatcc 14896795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 19350865 - 19351004
Alignment:
Q  13 gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa 112  Q
    |||||||||||||||||||||||||||||||| || | |||||||||| ||||||  | ||| ||||||| || ||||   |||||  || |||| | ||    
T  19350865 gtgagatgaatctttgtattctagaacttgagtttctcagttacttgggtttgagtgagaatcattttgatgtgataactattccatccattcaaaaaaa 19350964  T
Q  113 catcacacgtttatctaaacttgtctaccttgacttatcc 152  Q
    |||||||| ||  |||||||||||||||||||||||||||    
T  19350965 catcacacattcctctaaacttgtctaccttgacttatcc 19351004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 18015562 - 18015745
Alignment:
Q  13 gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa 112  Q
    ||||||||||| |||||||| ||||||||||  || | ||||||||||||||||| | |||||| ||||| || |||||  |||||  || |||| ||||    
T  18015562 gtgagatgaatttttgtattttagaacttgaatttcttagttacttggatttgagtttcaatgaatttgatgtgataagtattccatccattcaaaacaa 18015661  T
Q  113 catcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttc 202  Q
    |||||||| ||  ||||| ||| ||||||||||||||  ||||| || ||||      ||||||||||||||||||||  ||||||||||    
T  18015662 catcacacattcctctaaccttttctaccttgacttacacccccccactttt------actcttcacatggataatctggattggctttc 18015745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 13 - 152
Target Start/End: Complemental strand, 17728224 - 17728085
Alignment:
Q  13 gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa 112  Q
    |||||||||||||||||||||| ||||||||| || | ||||||||||||||||||| |||| | ||||| |  |||||| |||||  || ||| |||||    
T  17728224 gtgagatgaatctttgtattcttgaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcatcacaa 17728125  T
Q  113 catcacacgtttatctaaacttgtctaccttgacttatcc 152  Q
    ||||||||||| ||| || ||| | |||  ||||||||||    
T  17728124 catcacacgttcatcgaaccttttgtacactgacttatcc 17728085  T

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Target: chr3; HSP #19
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 18022264 - 18022403
Alignment:
Q  13 gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa 112  Q
    ||||| |||||||||||||||| ||||||||| || | ||||| |||||||||||  | ||||| ||||| || |||||| |||||   | |||||||||    
T  18022264 gtgagctgaatctttgtattcttgaacttgagtttcttagttatttggatttgagtcataatgaatttgatgtgataagaattccatctattcaacacaa 18022363  T
Q  113 catcacacgtttatctaaacttgtctaccttgacttatcc 152  Q
    ||||||||  | ||||||| || |||||||||||||||||    
T  18022364 catcacacactcatctaaatttttctaccttgacttatcc 18022403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 18146286 - 18146425
Alignment:
Q  13 gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa 112  Q
    |||||||||||||||||||||| ||||||||| || | | |||||||||||||||  | ||| |||||||  | |||||| |||||  || |||||||||    
T  18146286 gtgagatgaatctttgtattcttgaacttgagtttcttaattacttggatttgagtgataattattttgatatgataagaattccatccattcaacacaa 18146385  T
Q  113 catcacacgtttatctaaacttgtctaccttgacttatcc 152  Q
     ||||||| | ||||||| ||| | |||||||||||||||    
T  18146386 tatcacacatatatctaaccttttgtaccttgacttatcc 18146425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 13 - 152
Target Start/End: Complemental strand, 19029453 - 19029314
Alignment:
Q  13 gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa 112  Q
    |||||||||||||||||||||| ||||||||| || | ||||||||||||||||||| |||| | ||||| |  |||||| |||||  || ||| |||||    
T  19029453 gtgagatgaatctttgtattcttgaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcatcacaa 19029354  T
Q  113 catcacacgtttatctaaacttgtctaccttgacttatcc 152  Q
    ||||||||||| ||| || ||| | |||  ||||||||||    
T  19029353 catcacacgttcatcgaaccttttgtacactgacttatcc 19029314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 19399176 - 19399299
Alignment:
Q  13 gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa 112  Q
    ||||||||||||| |||||||||||||||||| || | |||||||||||||||||  | ||||| ||| | || |||||| |||||  || |||||||||    
T  19399176 gtgagatgaatctctgtattctagaacttgagtttctcagttacttggatttgagtgagaatgaatttcatgtgataagaattccatccattcaacacaa 19399275  T
Q  113 catcacacgtttatctaaacttgt 136  Q
     ||||||| || ||||||||||||    
T  19399276 tatcacacattcatctaaacttgt 19399299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 18107908 - 18108072
Alignment:
Q  13 gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa 112  Q
    |||||||||||||||||||||| || |||||| || | ||||| || ||||||||||  ||||||||||| || |||||| |||||  || |||||||||    
T  18107908 gtgagatgaatctttgtattcttgaccttgagtttctcagttatttagatttgagctggaatgattttgatgtcataagaattccatccattcaacacaa 18108007  T
Q  113 catcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttca 178  Q
     ||||||| || |||||| |||    |||||||||||||  || |  |||||||||||||||||||    
T  18108008 tatcacacattcatctaacctttcgcaccttgacttatcagccttt-tttttgataaaactcttca 18108072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 19419451 - 19419590
Alignment:
Q  13 gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa 112  Q
    |||||||||||||||||||| | ||||||||| || | |||||||||||||||||  | ||| | ||| | || |||||| |||||  || |||||||||    
T  19419451 gtgagatgaatctttgtatttttgaacttgagtttcttagttacttggatttgagtcataataaatttaatgtgataagaattccatccattcaacacaa 19419550  T
Q  113 catcacacgtttatctaaacttgtctaccttgacttatcc 152  Q
    |||||||| || |||||| |||||  | ||||||||||||    
T  19419551 catcacacattcatctaaccttgtgaaacttgacttatcc 19419590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 153
Target Start/End: Original strand, 19380361 - 19380501
Alignment:
Q  13 gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa 112  Q
    |||||||||||||||||||||| |||||| || || | |||||||||||||||||  | ||| ||||||| || |||||| |||||  || |||||| ||    
T  19380361 gtgagatgaatctttgtattcttgaacttaagtttcttagttacttggatttgagtgaaaataattttgatgtgataagaattccatccattcaacaaaa 19380460  T
Q  113 catcacacgtttatctaaacttgtctaccttgacttatccc 153  Q
    ||| |||| || |||||  ||| |  |||||||||||||||    
T  19380461 cattacacattcatctatccttttgcaccttgacttatccc 19380501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 17949438 - 17949470
Alignment:
Q  171 actcttcacatggataatcttcattggctttct 203  Q
    ||||| |||||||||||||||||||||||||||    
T  17949438 actctgcacatggataatcttcattggctttct 17949470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 13667415 - 13667228
Alignment:
Q  16 agatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacat 115  Q
    |||||||||||||||||||||||||| || || | || || |||||||||||  | ||||| ||||| || |||| | || ||  || ||||||||||||    
T  13667415 agatgaatctttgtattctagaacttaagtttctcagctatttggatttgagtcataatgaatttgatgtgataaaaatttcatccattcaacacaacat 13667316  T
Q  116 cacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttct 203  Q
    ||||  || |||||||||||||||||||||||||||| ||  || ||||||||| | ||||||||| ||||||||||||||| |||||    
T  13667315 cacaaattcatctaaacttgtctaccttgacttatccgcctacaattttgataatattcttcacattgataatcttcattggttttct 13667228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 8458944 - 8459080
Alignment:
Q  16 agatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacat 115  Q
    |||| |||||||  ||||||||||||||| || |||||||||||||||||||||   || | ||||| || |||||| |||||   | ||||||||||||    
T  8458944 agatcaatctttccattctagaacttgagtttctgagttacttggatttgagcttacataaatttgatgtgataagaattccatcgattcaacacaacat 8459043  T
Q  116 cacacgtttatctaaacttgtctaccttgacttatcc 152  Q
    ||||| |  |||||| ||| |  ||||||||||||||    
T  8459044 cacacatgcatctaaccttttgcaccttgacttatcc 8459080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 15531819 - 15531873
Alignment:
Q  13 gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgag 67  Q
    ||||||||||||||||||||||| |||||||| || | |||||||| ||||||||    
T  15531819 gtgagatgaatctttgtattctaaaacttgagtttcttagttacttcgatttgag 15531873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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