View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19592_low_2 (Length: 513)
Name: NF19592_low_2
Description: NF19592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19592_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 111 - 497
Target Start/End: Complemental strand, 25952304 - 25951918
Alignment:
| Q |
111 |
tttctggttcttcaaccgctttaacaatgcacaccttttctttcttccaactataggctgcacgcattctcccggttcactcttctcctccgtctccaaa |
210 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
25952304 |
tttctgcttcttcaaccgctttaacaatgcacaccttttctttcttccaactataggctgcacgcattttcccggttcactcttcttctccgtctccaaa |
25952205 |
T |
|
| Q |
211 |
gagggcaacggagttgtagtctcattagatatgataaatccaagaccagaatgtttagtcctcggtttcgcctcaataagatttaatataccctgctcat |
310 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25952204 |
gagggcaacggagttgtagtctcattagatatgttaaatccaagaccagattgtttagtcctcggtttcgcctcaataggatttaatataccctgctcat |
25952105 |
T |
|
| Q |
311 |
tcttcccaagaccacctcctttataacccattttctccatcagcttcattcccattccgttataattctccaatttcccaaaatccactgattcctcgtg |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| |||||| |||| || |
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| T |
25952104 |
tcttcccaagaccacctcctttataacccattttctccatcagcttcattcccattccgttataactcttgaatttcccaacatcaactgatccctcctg |
25952005 |
T |
|
| Q |
411 |
acctatactctgctcctgcttattgtcatcaaatttatcgtcattaggcatgaaaagtccggttgaaacaaaattcaccggtttagt |
497 |
Q |
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| T |
25952004 |
acctagaccctgctcctgtttattgtcatcatatttatcctcattaggcatgaaaattccggtggaaacaaaatttaccggtttagt |
25951918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 145 - 497
Target Start/End: Complemental strand, 25945674 - 25945322
Alignment:
| Q |
145 |
cttttctttcttccaactataggctgcacgcattctcccggttcactcttctcctccgtctccaaagagggcaacggagttgtagtctcattagatatga |
244 |
Q |
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|||||||||||||| |||| |||||| | || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25945674 |
cttttctttcttccgactacaggctgaatgccttctcccggttcactcttcttctccgtctccaaagagggcaacggagttgtagtctcattagatatgt |
25945575 |
T |
|
| Q |
245 |
taaatccaagaccagaatgtttagtcctcggtttcgcctcaataagatttaatataccctgctcattcttcccaagaccacctcctttataacccatttt |
344 |
Q |
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|||||||||||||||||| |||| |||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25945574 |
taaatccaagaccagaatatttatccctcagtttcgcctcgataggatttaatataccctgctcattcttcccaagaccacctcctttataacccatttt |
25945475 |
T |
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| Q |
345 |
ctccatcagcttcattcccattccgttataattctccaatttcccaaaatccactgattcctcgtgacctatactctgctcctgcttattgtcatcaaat |
444 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25945474 |
ctccatcagcttcattcccattccgttgtaattctccaatttcccaacatccactgattcctcgtgacctagactctgctcctgcttattgtcatcaaat |
25945375 |
T |
|
| Q |
445 |
ttatcgtcattaggcatgaaaagtccggttgaaacaaaattcaccggtttagt |
497 |
Q |
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||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25945374 |
ttatcctcattaggcatgaaagttccggttgaaacaaaattcaccggtttagt |
25945322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 25945827 - 25945716
Alignment:
| Q |
1 |
tatgagtatgcaacgcatgccaatttacacgagttataatactcgacatatcttttgtgcatgtgactaaagtattgagcaagggaatccaatgctaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25945827 |
tatgagtatgcaacgcatgccaatttacacgacttataatactcgacatatcttttgtgcatgtgcctaaagtattgagcaagggaatccaatgctaatg |
25945728 |
T |
|
| Q |
101 |
cattttcttctt |
112 |
Q |
| |
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|||||||||||| |
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| T |
25945727 |
cattttcttctt |
25945716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 417 - 485
Target Start/End: Complemental strand, 25951845 - 25951777
Alignment:
| Q |
417 |
actctgctcctgcttattgtcatcaaatttatcgtcattaggcatgaaaagtccggttgaaacaaaatt |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||| ||||| |
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| T |
25951845 |
actctgctcctgcttattgtcatcaaatttatcctcattaggcatgaaagttccggtagaaacgaaatt |
25951777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 420 - 485
Target Start/End: Complemental strand, 25951536 - 25951471
Alignment:
| Q |
420 |
ctgctcctgcttattgtcatcaaatttatcgtcattaggcatgaaaagtccggttgaaacaaaatt |
485 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||| ||||| |
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| T |
25951536 |
ctgctcctgcttattgtcatcaaatttatcctcattaggcatgaaagttccggtagaaacgaaatt |
25951471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 420 - 485
Target Start/End: Complemental strand, 25951689 - 25951624
Alignment:
| Q |
420 |
ctgctcctgcttattgtcatcaaatttatcgtcattaggcatgaaaagtccggttgaaacaaaatt |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||| ||||| |
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| T |
25951689 |
ctgctcctgcttattgtcatcaaatttatcctcattaggcatgaaagttccggtagaaacgaaatt |
25951624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 152 - 368
Target Start/End: Complemental strand, 2661529 - 2661316
Alignment:
| Q |
152 |
ttcttccaactataggctgcacgcattctcccggttcactcttctcctccgtctccaaagagggcaacggagttgtagtctcattagatatgataaatcc |
251 |
Q |
| |
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||||||||||| |||||||||| ||||||||||| |||||| |||||||| ||||| |||||||| |||| || | || ||| | ||||||| |
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| T |
2661529 |
ttcttccaactgtaggctgcacaa---ctcccggttcagtcttcttctccgtctgcaaagcaggcaacggcattgtggttcccttcgattcgttaaatcc |
2661433 |
T |
|
| Q |
252 |
aagaccagaatgtttagtcctcggtttcgcctcaataagatttaatataccctgctcattcttcccaagaccacctcctttataacccattttctccatc |
351 |
Q |
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||||||||||| ||||| |||| ||||| |||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| | | |
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| T |
2661432 |
aagaccagaatttttagccctcaacttcgcttcaataggatttaaaataccctgctcattcttcccaagaccaccccctttataacccatcttctcaagc |
2661333 |
T |
|
| Q |
352 |
agcttcattcccattcc |
368 |
Q |
| |
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||||||||||| ||||| |
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| T |
2661332 |
agcttcattccaattcc |
2661316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 2662055 - 2661956
Alignment:
| Q |
1 |
tatgagtatgcaacgcatgccaatttacacgagttataatactcgacatatcttttgtgcatgtgactaaagtattgagcaagggaatccaatgctaatg |
100 |
Q |
| |
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|||||| | |||| ||||| ||| |||||| ||||||| ||| |||||||||||||||||| ||||| ||||||||||||||||||||| ||||| |
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| T |
2662055 |
tatgagcaagcaatgcatgacaaattacacagcttataatcctcagcatatcttttgtgcatgtccataaagcattgagcaagggaatccaatgttaatg |
2661956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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