View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19592_low_3 (Length: 496)
Name: NF19592_low_3
Description: NF19592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19592_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 10 - 412
Target Start/End: Complemental strand, 12224510 - 12224103
Alignment:
| Q |
10 |
ataatactaactaaactcaaagacatcatcaatatatgtcctaaaagaataacaaccttcttagaatctaacacaaaatctacattattgaactgaaggt |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12224510 |
ataatactaactaaactcaaagacatcatcaatatatgtcctaaaagaataacaaccttcttagaatctaacagaaaatctacattattgaactgaaggt |
12224411 |
T |
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| Q |
110 |
ttgccacccaatcaagtgtcgtatataaacttgttgcatcgacgtcacaaaatggggagaaccaagtagtttatgcaatcataaattttccttcttcatc |
209 |
Q |
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| T |
12224410 |
ttggcacccaatcaagtgtcgtatataaacttgttgcatcgacgtcacaaaatggggagaaccaagtagtttatgcaatcataaattttccttcttcatc |
12224311 |
T |
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| Q |
210 |
tctaagacacattctaagttctagcttattgaacaa---------cgagtcatatatattgcatttataccttccaagggcccatttttgcccatcggtg |
300 |
Q |
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| T |
12224310 |
tctaagacacattctaagtcctaccttgttgaacaacgaggagaacgagacatatatattgcatttat---ttccaagggcctatttttgcccatcagtg |
12224214 |
T |
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| Q |
301 |
agaagctataagagatggtccatgtggatcagaagtagagggagttgcaccgcttgagcgaataacttgagcatgtctccattcttccatcaactacttt |
400 |
Q |
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| T |
12224213 |
agaagctataagagacggcccatgtggatcagaagtaaagggagtttcaccacctgagcgaataacttgagcacgtctcca-tcttccatcaaatacttt |
12224115 |
T |
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| Q |
401 |
gcatgctatata |
412 |
Q |
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||| |||||||| |
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| T |
12224114 |
gcacgctatata |
12224103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 61 - 140
Target Start/End: Original strand, 23316277 - 23316356
Alignment:
| Q |
61 |
acaaccttcttagaatctaacacaaaatctacattattgaactgaaggtttgccacccaatcaagtgtcgtatataaact |
140 |
Q |
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| T |
23316277 |
acaaccttcttagagtcgaacacaaaatctacattatggaactaaagatttaccacccaatcaagttccgtttataaact |
23316356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 449 - 479
Target Start/End: Complemental strand, 12224082 - 12224052
Alignment:
| Q |
449 |
aattattgctacaaaatgttcactctacatt |
479 |
Q |
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| T |
12224082 |
aattattgctacaaaatgttcactctacatt |
12224052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 31 - 412
Target Start/End: Original strand, 38246201 - 38246598
Alignment:
| Q |
31 |
gacatcatcaatatatgtcctaaaagaat-aacaaccttcttagaatctaacacaaaatctacattattgaactgaaggtttgccacccaatcaagtgtc |
129 |
Q |
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|||||||| ||| |||| ||||| |||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
38246201 |
gacatcatttatacatgttctaaaggaatcaacaaccttcttagaatctaacacaaagtctacattatcaaactgaaggtttgccacccaatcaagtgtc |
38246300 |
T |
|
| Q |
130 |
gtatataaacttgtt---------gcatcgacgtcacaaaatggggagaaccaagtagtttatgcaatcataaattttccttcttcatctctaagacaca |
220 |
Q |
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||| ||||||| || |||| ||||||||||| ||||||||||| ||| ||| ||||| |||||| || || ||||| ||||||| ||| |
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| T |
38246301 |
gtacataaactcattgcttcacccgcattgacgtcacaaagcggggagaaccaggtactttttgcaagcataaaattaccctcttcgcctctaag--aca |
38246398 |
T |
|
| Q |
221 |
ttctaagttctagcttatt---------gaacaacgagtcatatatattgcatttataccttccaagggcccatttttgcccatcggtgagaagctataa |
311 |
Q |
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||| |||| ||| |||||| | | |||||| ||| ||| || |||||||||||| | |||| || |||| ||||| | | ||||||||| |
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| T |
38246399 |
ttccaagtcctaccttattaagcgacgaggagaacgaggcatctatttttcatttatacctt-ctaggggccggttttacccattgttaccaagctataa |
38246497 |
T |
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| Q |
312 |
gagatggtccatgtggatcagaagtagagggagttgcaccgcttgagcgaataacttgagcatgtctccattcttccatcaactactttgcatgctatat |
411 |
Q |
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||| || ||||||||||||||| ||||||||||| ||| | | | ||||| ||||| |||||||||||||| |||||||||||||||||| ||| ||| |
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| T |
38246498 |
gagtcggcccatgtggatcagaactagagggagttacactacctaaacgaatgacttgtgcatgtctccattcatccatcaactactttgcacgctctat |
38246597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 46210779 - 46210682
Alignment:
| Q |
17 |
taactaaactcaaagacatcatcaatatatgtcctaaaagaata-acaaccttcttagaatctaacacaaaatctacattattgaactgaaggtttgc |
113 |
Q |
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|||| |||||||| | |||||| ||||||||||||||| ||| |||||||||||||||||||| |||||||| ||||||| ||| ||||||||||| |
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| T |
46210779 |
taaccaaactcaatgttatcatctatatatgtcctaaaataatcgacaaccttcttagaatctaaaacaaaatcaacattatcgaaatgaaggtttgc |
46210682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 135
Target Start/End: Original strand, 9170215 - 9170325
Alignment:
| Q |
22 |
aaactcaaagacatcatcaatatatgtcctaaaagaataacaaccttcttagaatctaacacaaaatctacattattgaactgaaggtttgccacccaat |
121 |
Q |
| |
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|||||||| ||||| ||| ||| |||| |||||||| | |||| ||||| ||||||||| |||||||||||||| ||| ||| ||||||||||||| |
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| T |
9170215 |
aaactcaatgacattatctatacatgttctaaaagagt--caacaatcttataatctaacaaaaaatctacattatcaaac-caagctttgccacccaat |
9170311 |
T |
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| Q |
122 |
caagtgtcgtatat |
135 |
Q |
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||| |||| ||||| |
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| T |
9170312 |
caaatgtcttatat |
9170325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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