View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19592_low_4 (Length: 458)

Name: NF19592_low_4
Description: NF19592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19592_low_4
NF19592_low_4
[»] chr3 (2 HSPs)
chr3 (80-441)||(33161425-33161790)
chr3 (80-151)||(41876081-41876152)
[»] chr4 (3 HSPs)
chr4 (12-151)||(41128194-41128336)
chr4 (80-152)||(32116302-32116374)
chr4 (79-151)||(55048403-55048475)
[»] chr5 (6 HSPs)
chr5 (80-157)||(6784681-6784758)
chr5 (73-152)||(18915713-18915792)
chr5 (80-158)||(17491340-17491418)
chr5 (80-157)||(6775579-6775656)
chr5 (80-150)||(34367077-34367147)
chr5 (73-151)||(25345980-25346058)
[»] chr2 (2 HSPs)
chr2 (80-154)||(7962257-7962331)
chr2 (80-154)||(12793899-12793973)
[»] chr8 (1 HSPs)
chr8 (75-151)||(33863577-33863653)
[»] chr1 (1 HSPs)
chr1 (80-152)||(29579117-29579189)


Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 80 - 441
Target Start/End: Complemental strand, 33161790 - 33161425
Alignment:
Q  80 tgaacccgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatccatttgttgttaagtcaccatctcagttc 179  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||| ||||    
T  33161790 tgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatccatttgatgttaaaccaccatctccgttc 33161691  T
Q  180 tactaataaccatcatc---------gcagaaaaactatataaacaacattttcccgccaaacgcaacaaaccaaaaaattcctatttnnnnnnnnnnnn 270  Q
     ||||||||||||||||         |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||                
T  33161690 cactaataaccatcatcaccatcatcgcagaaaa-ctatataaacaacattttcccgccaaacgcaacaaaccaaaaaattcctattttctctctct--- 33161595  T
Q  271 natctcgtcttggagatagaatcttgaattttcgcgggaaaatcaatcaatggaagaagaaagctccgaattcatcgacatcaagctttcttctccggcg 370  Q
     ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33161594 -atctcttcttggagatagaatcttgaattttcgcgggaaaatcaatcaatggaagaagaaagctccgaattcatcgacatcaagctttcttctccggcg 33161496  T
Q  371 aagaagctcccactcgatcttcctcaagatccgcagctcaaatcctgccgccgtctccgccgcagaggtga 441  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33161495 aagaagctcccactcgatcttcctcaagatccgcagctcaaatcctgccgtcgtctccgccgcagaggtga 33161425  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 41876081 - 41876152
Alignment:
Q  80 tgaacccgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatcc 151  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41876081 tgaacctgacatgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatcc 41876152  T

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Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 12 - 151
Target Start/End: Original strand, 41128194 - 41128336
Alignment:
Q  12 gagattgagatgtgatgattttggcgtatgtgaaaaattgacaaaaga---aattatgaatcggagggatttgaacccgacgtgaatcgaacacgcaacc 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41128194 gagattgagatgtgatgattttggcgtatgtgaaaaattgacaaaaaatattattatgaatcggagggatttgaacccgacgtgaatcgaacacgcaacc 41128293  T
Q  109 ttctgatctggagtcagacgcgctaccattgcgccacagatcc 151  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  41128294 ttctgatctggagtcagacgcgctaccattgcgccacggatcc 41128336  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 32116374 - 32116302
Alignment:
Q  80 tgaacccgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatcca 152  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32116374 tgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatcca 32116302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 55048403 - 55048475
Alignment:
Q  79 ttgaacccgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatcc 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  55048403 ttgaacccgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacggatcc 55048475  T

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Target: chr5 (Bit Score: 74; Significance: 9e-34; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 6784681 - 6784758
Alignment:
Q  80 tgaacccgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatccatttgt 157  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6784681 tgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatccatttgt 6784758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 18915792 - 18915713
Alignment:
Q  73 agggatttgaacccgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatcca 152  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18915792 agggaattgaacccgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacggatcca 18915713  T

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Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 17491418 - 17491340
Alignment:
Q  80 tgaacccgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatccatttgtt 158  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17491418 tgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatccacttgtt 17491340  T

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Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 6775579 - 6775656
Alignment:
Q  80 tgaacccgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatccatttgt 157  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6775579 tgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatccacttgt 6775656  T

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Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 34367077 - 34367147
Alignment:
Q  80 tgaacccgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatc 150  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34367077 tgaacctgatgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatc 34367147  T

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Target: chr5; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 25346058 - 25345980
Alignment:
Q  73 agggatttgaacccgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatcc 151  Q
    ||||| |||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  25346058 agggaattgaacccgacgagaatcaaacacgcaaccttttgatctggagtcagacgcgctaccattgcgccacggatcc 25345980  T

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Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 7962257 - 7962331
Alignment:
Q  80 tgaacccgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatccatt 154  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7962257 tgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatccatt 7962331  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 12793973 - 12793899
Alignment:
Q  80 tgaacccgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatccatt 154  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12793973 tgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatccatt 12793899  T

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Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 33863653 - 33863577
Alignment:
Q  75 ggatttgaacccgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatcc 151  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33863653 ggatgtgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatcc 33863577  T

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Target: chr1 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 29579117 - 29579189
Alignment:
Q  80 tgaacccgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatcca 152  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29579117 tgaacctgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacagatcca 29579189  T

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