View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19592_low_5 (Length: 428)
Name: NF19592_low_5
Description: NF19592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19592_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 25645278 - 25645390
Alignment:
| Q |
11 |
caaaggataccaattgaacttcaagttgaagacattgtatgttgccacaattttccaacacattcttagactctttatgtccacaaacacaagcatgcat |
110 |
Q |
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| T |
25645278 |
caaaggataccaattgaacttcaagttgaagacattgtatgttgtcacaattttccaacacattcttagactctttatgtccacaaacacaagcatgcat |
25645377 |
T |
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| Q |
111 |
gtgcgatgatttt |
123 |
Q |
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| T |
25645378 |
gtgcgatgatttt |
25645390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 25941455 - 25941337
Alignment:
| Q |
15 |
ggataccaattgaacttcaagttgaagacattgtatgttgccacaattttccaacacattcttagactctttatgt-ccacaaacacaagcatgcatgtg |
113 |
Q |
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| T |
25941455 |
ggataccaattcaacttcaaggtgaaggcattgtatgttgccacaattttccaacacaatcttaggctctttatgtcccacaaacacaagcatgcatgtg |
25941356 |
T |
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| Q |
114 |
cgatgattttattgctttt |
132 |
Q |
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| T |
25941355 |
caatgattttattgctttt |
25941337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 307 - 402
Target Start/End: Original strand, 25645396 - 25645492
Alignment:
| Q |
307 |
tcgtaatatt-agatcttcatttctagttgtttagttgagcatgtgaaatgaacttctaaagtttctgctcaccatctagccaagtttgttttatct |
402 |
Q |
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| T |
25645396 |
tcgtaatatttaaatcttcatttctaattgttttgttgagcatgtgaaatgaacttctaaagtttctgctcaccatctagccaagtttgttttatct |
25645492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 402
Target Start/End: Complemental strand, 2128706 - 2128618
Alignment:
| Q |
315 |
ttagatcttcattt-ctagttgtttagttgagcatgtgaaatgaacttctaaagtttctgctcaccatctagccaagtttgttttatct |
402 |
Q |
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| T |
2128706 |
ttagatcttcattttctaattatttagttgatcatgtgaaacaaacttctaatgattatattcaccatctagttaagtttgttttatct |
2128618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 398
Target Start/End: Complemental strand, 14051726 - 14051662
Alignment:
| Q |
334 |
tgtttagttgagcatgtgaaatgaacttctaaagtttctgctcaccatctagccaagtttgtttt |
398 |
Q |
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| T |
14051726 |
tgtttagttgaacatgtgaaacgaacttctaatgttgctattcaccatctaactaagcttgtttt |
14051662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 402
Target Start/End: Complemental strand, 35324510 - 35324438
Alignment:
| Q |
330 |
tagttgtttagttgagcatgtgaaatgaacttctaaagtttctgctcaccatctagccaagtttgttttatct |
402 |
Q |
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| T |
35324510 |
tagttgtttggttgagtatgtgaaacgatcttctaatgtttcttttcttcatctagttaagtttgttttatct |
35324438 |
T |
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