View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19592_low_7 (Length: 336)
Name: NF19592_low_7
Description: NF19592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19592_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 14 - 336
Target Start/End: Complemental strand, 25066491 - 25066166
Alignment:
| Q |
14 |
caaaggtcaaagttgtaattaaatgtatgtgcatatacataatttatgaaaaattaatggttaaagtcgtatattttga---gtgagatcatctttaatt |
110 |
Q |
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| T |
25066491 |
caaagctcaaagttgtaattaaatgtatgtacatatacatagtttatgaaaaattaatggttaaagtcgtatattttgacatgtgagatcatctttaatt |
25066392 |
T |
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| Q |
111 |
aatggttgattaattggttggtcaaagttgaaattttgccaatatttttaattgttagtttaattttgttgattctattgtcatgcaatagtttaaatca |
210 |
Q |
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| T |
25066391 |
aatggttgattaattggttggtcaaagtcgaaattttgccaatatttttaattgttagtttaattttgttgattctattgtcatgcaatagtttaaatca |
25066292 |
T |
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| Q |
211 |
ttcataattatgaattgctttacatgatttatcatttgtttttctgaaatttgtgttataatttagattttataacctatgtttagttatgcgcaatttc |
310 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25066291 |
ttcataattatgaattgctttagatgatttatcatttgtttttctgaaatttgtgttacaatttagattttataacctatgtttagttatgcgcaatttc |
25066192 |
T |
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| Q |
311 |
ttaatgtttgcttcaaatattctata |
336 |
Q |
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|||||||||||||||||||||||||| |
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| T |
25066191 |
ttaatgtttgcttcaaatattctata |
25066166 |
T |
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