View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19592_low_8 (Length: 307)
Name: NF19592_low_8
Description: NF19592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19592_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 293
Target Start/End: Complemental strand, 4573124 - 4572851
Alignment:
| Q |
19 |
acaatgaatcaaacacattgcttttggatgattctccccacaaggcattgcttaatcctgtaaataaacttacccttcctttgtatttttcttcatttat |
118 |
Q |
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| T |
4573124 |
acaatgaatcaaacacattgcttttggatgattctccccacaaggcattgcttaatcctgtaaataaactaacccttcctttgtatttttcttcatttat |
4573025 |
T |
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| Q |
119 |
catgcnnnnnnncgactatcatgtcctaacttatgcttaatgtttttgataaactattgtagccatacaactcaatctttcctcatacattcagttatga |
218 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4573024 |
catgctttttttcgactatcatgtcctaacttatgcttaatgtttt-gataaattattgtagccatacaactcaatctttcctcatacattcagttatga |
4572926 |
T |
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| Q |
219 |
gaatcagaatgacaattcactaggtatgttacacaataactttcatatatgtaaagtcataaggttttgcttgat |
293 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4572925 |
gaatcagaatgacaattcactaggtatgttacacaatgactttcatatatgtaaagtcataaggttttgcttgat |
4572851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 4600529 - 4600298
Alignment:
| Q |
19 |
acaatgaatcaaacacattgcttttggatgattctccccacaaggcattgcttaatcctgtaaataaacttacccttcctttgtatttttcttcatttat |
118 |
Q |
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||||||| |||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
4600529 |
acaatgagtcaaacacattgctgttggatgattctccctacaaggcactgcttaatcctgtaaatcaactaacccttcctttgtatttttcttcatttat |
4600430 |
T |
|
| Q |
119 |
catgcnnnnnnncgactatcatgtcctaacttatgcttaatgtttttgataaactattgtagccatacaactcaatctttcctcatacattcagttatga |
218 |
Q |
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| T |
4600429 |
catgctttttttcaacaatcatgtcctaacttatgcttaatgtttt-gataaattattgtagccatacaactcaatctttcctcatacattcagttatga |
4600331 |
T |
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| Q |
219 |
gaatcagaatgacaattcactaggtatgttaca |
251 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
4600330 |
gaatcagaatgacacttcactaggtatgttaca |
4600298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 173 - 293
Target Start/End: Complemental strand, 4591928 - 4591806
Alignment:
| Q |
173 |
tattgtagccatacaactcaatctttcctcatacattcagttatgagaatcagaatgacaattcactaggtatgttacacaataactttcatata--tgt |
270 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||| |||| ||| | | |||||| ||| |
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| T |
4591928 |
tattgcagccatacaactcaatctttccgcatacattcagttatgagagtcagaatgacaattcattaggtatggtacaaaatgatctacatatatttgt |
4591829 |
T |
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| Q |
271 |
aaagtcataaggttttgcttgat |
293 |
Q |
| |
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||| ||||||||||||||||||| |
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| T |
4591828 |
aaactcataaggttttgcttgat |
4591806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 164 - 247
Target Start/End: Complemental strand, 4584201 - 4584118
Alignment:
| Q |
164 |
ttgataaactattgtagccatacaactcaatctttcctcatacattcagttatgagaatcagaatgacaattcactaggtatgt |
247 |
Q |
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| T |
4584201 |
ttgatgaattattgcagccacacaactcaatctttccgcatacattcagttatgagaatcagaatgacaattcattaggtatgt |
4584118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 251
Target Start/End: Complemental strand, 4605453 - 4605341
Alignment:
| Q |
138 |
catgtcctaacttatgcttaatgtttttgataaactattgtagccatacaactcaatctttcctcatacattcagttatgagaatcagaatgacaattca |
237 |
Q |
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|||||||||||||||| |||||||||| |||| | | |||||||||||||||||||||||||| || |||||| |||| ||| |||| ||||| ||| |
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| T |
4605453 |
catgtcctaacttatgtttaatgtttt-gatacattgttgtagccatacaactcaatctttccacactcattcacttatcggaaaaagaaggacaaatca |
4605355 |
T |
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| Q |
238 |
ctaggtatgttaca |
251 |
Q |
| |
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||||||||| |||| |
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| T |
4605354 |
ctaggtatggtaca |
4605341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 4605567 - 4605498
Alignment:
| Q |
19 |
acaatgaatcaaacacattgcttttggatgattctccccacaaggcattgcttaatcctgtaaataaact |
88 |
Q |
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||||||||||||| ||||||||||||||||| |||||| |||||| || |||||||||||||||||||| |
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| T |
4605567 |
acaatgaatcaaatacattgcttttggatgactctccctacaaggggttacttaatcctgtaaataaact |
4605498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 4584351 - 4584275
Alignment:
| Q |
19 |
acaatgaatcaaacacattgcttttggatgattctccccacaaggcattgcttaatcctgtaaataaacttaccctt |
95 |
Q |
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||||||| || ||||| ||||| |||||||||||||| |||||||||| |||||||||||||||||||| |||||| |
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| T |
4584351 |
acaatgactcgaacacgttgctgctggatgattctccctacaaggcattccttaatcctgtaaataaactaaccctt |
4584275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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