View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19593_high_13 (Length: 273)
Name: NF19593_high_13
Description: NF19593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19593_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 41887165 - 41886912
Alignment:
| Q |
1 |
aagtaactattgcctctgcaatttcagaaggtaagcctcgtcaggaggaccttccattgcaaaagatgaaagcaactcatccgagatattcaaaaaccac |
100 |
Q |
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| T |
41887165 |
aagtaactattgcctctgcaatttcagaaggtaagcctcgtcaggaggaccttccattgcaaaagatgaaagcaactcatccgagatattcaaaaaccac |
41887066 |
T |
|
| Q |
101 |
aaatcaagacaagtcaagtcctttcaaacttaccaagctgtcaataaaatgtgaagtaatatgtgttagatttctagtgtgaggattggaaatggataaa |
200 |
Q |
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| T |
41887065 |
aaatcaagacaagtcaagtcctttcaaacttaccaagctgtcaataaaatgtgaagtaatatgtgttagatttctagtgtaaggattggaaatggataaa |
41886966 |
T |
|
| Q |
201 |
gacttcaatgttggtctttcgcggagagcagaaacaataccaacctccgttatg |
254 |
Q |
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| T |
41886965 |
gacttcaatgttggtctttcccggagagcagaaacaataccaacctccgttatg |
41886912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 136
Target Start/End: Complemental strand, 41889019 - 41888933
Alignment:
| Q |
49 |
accttccattgcaaaagatgaaagcaactcatccgagatattcaaaaaccacaaatcaagacaagtcaagtcctttcaaacttaccaa |
136 |
Q |
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| T |
41889019 |
accttgcattgcaatagaggaaagcatctcatcggagatattcaaagaaaacaaatcaagacaagtcaagtac-ttcaaactcaccaa |
41888933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 41900856 - 41900799
Alignment:
| Q |
185 |
attggaaatggataaagacttcaatgttggtctttcgcggagagcagaaacaatacca |
242 |
Q |
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| T |
41900856 |
attggaaaatgataaagacctcaatgttggtctctggcggagagcagaagcaagacca |
41900799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 158
Target Start/End: Original strand, 10615252 - 10615326
Alignment:
| Q |
83 |
gagatattcaaaaaccacaaatcaagacaagtcaagtcctttcaaacttaccaagctgtcaataaaatgtgaagta |
158 |
Q |
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| T |
10615252 |
gagatattcataaactgcaaatcaagacaagtcaag-cccttcaaactcaccaatgagtcaataaaatgtgaagta |
10615326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 51763783 - 51763737
Alignment:
| Q |
187 |
tggaaatggataaagacttcaatgttggtctttcgcggagagcagaa |
233 |
Q |
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| T |
51763783 |
tggaaaaggataaagacgtcaatgttggtctttcacggagagcagaa |
51763737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 18315021 - 18314967
Alignment:
| Q |
187 |
tggaaatggataaagacttcaatgttggtctttcgcggagagcagaaacaatacc |
241 |
Q |
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||||||||||||||||| |||| |||||||| || ||||||||| || ||||||| |
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| T |
18315021 |
tggaaatggataaagacctcaaagttggtctctcacggagagcaaaagcaatacc |
18314967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 1601177 - 1601221
Alignment:
| Q |
189 |
gaaatggataaagacttcaatgttggtctttcgcggagagcagaa |
233 |
Q |
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|||| |||||||||| ||||||||||||| || |||||||||||| |
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| T |
1601177 |
gaaaaggataaagacctcaatgttggtctctcacggagagcagaa |
1601221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 53761192 - 53761152
Alignment:
| Q |
198 |
aaagacttcaatgttggtctttcgcggagagcagaaacaat |
238 |
Q |
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|||||| |||||||||||||||| |||||||||||| |||| |
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| T |
53761192 |
aaagacgtcaatgttggtctttcacggagagcagaagcaat |
53761152 |
T |
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