View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19593_high_14 (Length: 270)
Name: NF19593_high_14
Description: NF19593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19593_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 255
Target Start/End: Complemental strand, 3307615 - 3307372
Alignment:
| Q |
12 |
ttgtttcataagctgctgagttaacaaaatccgagtaccnnnnnnnggttgctactatcgacaagctagaaaaaagaggttcaaacattgaaacattgga |
111 |
Q |
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| T |
3307615 |
ttgtttcataggctgctgagttaacaaaatccgagtaccaaaaaaaggttgctactatcgacaagctagaaaaaagaggttcaaacattgaaacattgga |
3307516 |
T |
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| Q |
112 |
gaaagaaaaagcagctctgagtcatttggattcagtttacattgtagatatgcaatcattggactcaacaatttcagagataaatgatttacgtgatcaa |
211 |
Q |
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| T |
3307515 |
gaaagaaaaagcagctctgagtcatttggattcagtttacattgtagatatgcaatcattggactcaacaatttcagagataaatgatttacgtgatcaa |
3307416 |
T |
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| Q |
212 |
caattgtatccgaaacttgtgcagcttgttgatgggtgagttat |
255 |
Q |
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| T |
3307415 |
caattgtatccgaaacttgtgcagcttgttgatgggtgagttat |
3307372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 243
Target Start/End: Original strand, 43917462 - 43917605
Alignment:
| Q |
100 |
tgaaacattggagaaagaaaaagcagctctgagtcatttggattcagtttacattgtagatatgcaatcattggactcaacaatttcagagataaatgat |
199 |
Q |
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|||| |||||||||||| ||||||||| | ||||| ||| || || || ||||||||||||||||||||||| || ||| | |||||||| || |
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| T |
43917462 |
tgaagcattggagaaagccaaagcagctgtcagtcaattgcatacaagatatattgtagatatgcaatcattggattcgacagtctcagagattaaccga |
43917561 |
T |
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| Q |
200 |
ttacgtgatcaacaattgtatccgaaacttgtgcagcttgttga |
243 |
Q |
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| T |
43917562 |
ttacgtgatgaacaattgtatccaagacttgttaagcttgttga |
43917605 |
T |
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