View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19593_high_2 (Length: 614)

Name: NF19593_high_2
Description: NF19593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19593_high_2
NF19593_high_2
[»] chr1 (1 HSPs)
chr1 (16-486)||(8444370-8444840)
[»] chr3 (4 HSPs)
chr3 (22-83)||(376949-377010)
chr3 (38-81)||(53143392-53143435)
chr3 (15-81)||(7885807-7885873)
chr3 (31-81)||(45707488-45707538)
[»] chr5 (2 HSPs)
chr5 (29-81)||(8433952-8434004)
chr5 (30-81)||(606621-606672)
[»] chr4 (2 HSPs)
chr4 (20-81)||(25479563-25479624)
chr4 (29-81)||(37247409-37247461)
[»] chr8 (1 HSPs)
chr8 (29-81)||(44103986-44104038)


Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 16 - 486
Target Start/End: Complemental strand, 8444840 - 8444370
Alignment:
Q  16 attctccaatgaaggtatctattaggtgccatgtcttaaatggtaaagacctcaccattgaggatgattttagagacattccatagacaaaatatattca 115  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| || ||||||| |||||||||||||||||||||||    
T  8444840 attcttcaatgaaggtatctattaagtgccatgtcttaaatggtaaagacctcaccattgaagataatcttagagatattccatagacaaaatatattca 8444741  T
Q  116 agtttctctttttcttaatcaatttcgtccataaaattataaaaagaaaaagttaatggcaatatattttaaatttcgatacttttaaaatggttgttta 215  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8444740 tgtttctctttttcttaatcaatttcgtccataaaattataaaaagaaaaagttaatggcaatatattttaaatttcgatacttttaaaatggttgttta 8444641  T
Q  216 ttcataaaaagtttatataagtgtgatattttttaaggttacattattttttcaacattgaagcaaaatatacaagttacttaaatatgatatcgtattg 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  8444640 ttcataaaaagtttatataagtgtgatattttttaaggttacattattttttcaacattgaagcaaaatatacgagttatttaaatatgatatcgtattg 8444541  T
Q  316 tgaaaaccaatagtagttatgaaactcattgtgagttccttacctgttgaataaactatctttcatatttacatgtggattgactctaaacattgctaat 415  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8444540 tgaaaaccactagtagttatgaaactcattgtgagttccttacctgttgaataaactatctttcatatttacatgtggattgactctaaacattgctaat 8444441  T
Q  416 aatgaaaggtcctttccattttccaaatttaggatttttaactccaaactgtaagattgatacctaacata 486  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8444440 aatgaaaggtcctttccattttccaaatttaggatttttaactccaaactgtaagattgatacctaacata 8444370  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 377010 - 376949
Alignment:
Q  22 caatgaaggtatctattaggtgccatgtcttaaatggtaaagacctcaccattgaggatgat 83  Q
    ||||||||||| ||||||| | | | |||||||||||| |||||||||||||||||||||||    
T  377010 caatgaaggtacctattagatactaggtcttaaatggtgaagacctcaccattgaggatgat 376949  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 53143435 - 53143392
Alignment:
Q  38 taggtgccatgtcttaaatggtaaagacctcaccattgaggatg 81  Q
    ||||| |||||||||||||||| ||||||||||||||| |||||    
T  53143435 taggtaccatgtcttaaatggttaagacctcaccattgtggatg 53143392  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 7885873 - 7885807
Alignment:
Q  15 tattctccaatgaaggtatctattaggtgccatgtcttaaatggtaaagacctcaccattgaggatg 81  Q
    ||||| |||||| ||||| |||||||||  |  |||||||||||| ||||||||||||||| |||||    
T  7885873 tattcgccaatggaggtacctattaggtatcgggtcttaaatggtgaagacctcaccattggggatg 7885807  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 45707538 - 45707488
Alignment:
Q  31 tatctattaggtgccatgtcttaaatggtaaagacctcaccattgaggatg 81  Q
    |||||||||||| ||   ||||||||||| |||||||||||||||||||||    
T  45707538 tatctattaggtaccggatcttaaatggtgaagacctcaccattgaggatg 45707488  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 8433952 - 8434004
Alignment:
Q  29 ggtatctattaggtgccatgtcttaaatggtaaagacctcaccattgaggatg 81  Q
    |||| ||||||||| ||| |||||||||||| ||||||||||||||| |||||    
T  8433952 ggtacctattaggtaccaggtcttaaatggtgaagacctcaccattgtggatg 8434004  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 606621 - 606672
Alignment:
Q  30 gtatctattaggtgccatgtcttaaatggtaaagacctcaccattgaggatg 81  Q
    ||||||||||||| | | |||||||||||| ||||||||||||||| |||||    
T  606621 gtatctattaggtactaggtcttaaatggtgaagacctcaccattgtggatg 606672  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 25479624 - 25479563
Alignment:
Q  20 tccaatgaaggtatctattaggtgccatgtcttaaatggtaaagacctcaccattgaggatg 81  Q
    |||||||||| || ||||||||| |||  ||||||||||| |||||||||| ||||| ||||    
T  25479624 tccaatgaagatacctattaggtaccaaatcttaaatggtgaagacctcactattgaagatg 25479563  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 37247409 - 37247461
Alignment:
Q  29 ggtatctattaggtgccatgtcttaaatggtaaagacctcaccattgaggatg 81  Q
    |||| ||||||||| |||  ||||||||||| ||||||||||||||| |||||    
T  37247409 ggtacctattaggtaccagatcttaaatggtgaagacctcaccattgtggatg 37247461  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 44104038 - 44103986
Alignment:
Q  29 ggtatctattaggtgccatgtcttaaatggtaaagacctcaccattgaggatg 81  Q
    |||| ||||||||| ||| |||||||||||| |||||||||||| || |||||    
T  44104038 ggtacctattaggtaccaagtcttaaatggtgaagacctcaccaatgtggatg 44103986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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