View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19593_high_3 (Length: 583)
Name: NF19593_high_3
Description: NF19593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19593_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 12 - 568
Target Start/End: Complemental strand, 32578689 - 32578139
Alignment:
| Q |
12 |
aatataaggtggccaatggtacatactacatgtgttgttgtgtattaaagggagattgtgccaagtaggtactgacatatcacaatcagacccctaaaaa |
111 |
Q |
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| T |
32578689 |
aatataaggtggccaatggtacatactacatgtgttgttgtgtattaaagggagattgtgccaagtaggtactgacatatcacaatcagacccctaaaaa |
32578590 |
T |
|
| Q |
112 |
acagatactgacagttttgcaggactcccaccatggggtgatacatacaaaattaatggcctgctattatagtgtagattggctttagaccacgtccatt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32578589 |
acagatactgacagttttgcaggactcccaccatggggtgatacatacaaaattaatggcctgctattatagtgtagattggctttagaccacgtctatt |
32578490 |
T |
|
| Q |
212 |
aatggaaaacgccaagccatgttagggagagacatagagacagattcataagaagttaagcattatgaccataccgaagaactgaagatatgatacacca |
311 |
Q |
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| T |
32578489 |
aatggaaaacgccaagccatgttagggagagacatagagacagattcataagaagttaagtattatgaccataccgaagaactgaagatatgatacacca |
32578390 |
T |
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| Q |
312 |
aaaacattaaaattgattttgacaggttgatggttctcaattataattaccatgctttgtaatgttattttatagtcgannnnnnnnatcaactcacatt |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
32578389 |
aaaacattaaaattgattttgacaggttgatggttctcaattataattaccatgctttgaaatgttattttatagtcgattttttttatcaactcacatt |
32578290 |
T |
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| Q |
412 |
catatatccgaatataagatattttaacttgatgattttgaaccaaaatcaatttaaatcactgtatggattaagtatatgttcgaatgaattgatatta |
511 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32578289 |
catatatccgaatataagatattttaacttgatgat------ctaaaatcaatttaaatcactgtatggattaagtatatgttcgaatgaattgatatta |
32578196 |
T |
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| Q |
512 |
accaaaattcagagatatactcgattcatcggagattattaggtcatgcatttacat |
568 |
Q |
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| T |
32578195 |
accaaaattcagagatatactcgattcatcggagattattaggtcatgcatttacat |
32578139 |
T |
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