View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19593_high_4 (Length: 522)
Name: NF19593_high_4
Description: NF19593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19593_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 13 - 507
Target Start/End: Original strand, 30517410 - 30517885
Alignment:
| Q |
13 |
aatattcacaaaatattaagtactaataattttatttttattaacaaagaaatattttataactttgtatataaatatgagaagaaacaaagaaaaaatt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
30517410 |
aatattcacaaaatattaagtactaataattttatttttattaacaaagagatattttataacttt----------atgagaagaaacaaagaaaaaatt |
30517499 |
T |
|
| Q |
113 |
tgcttaatgagtttcggttaaggacggattgtttgggataccaagagttcaaatgcagaggaacgatattttatcagactttacttatctc--aactcaa |
210 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||| | || || |
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| T |
30517500 |
tgcttaatgagtttcggttaaggacggattgtttgggttaccaagagttcaaatgcaaaggaacga----------gactttacttatctctcagctgaa |
30517589 |
T |
|
| Q |
211 |
ccctttgtgagaatgagaagtctatgaaaaaagattagagctaagaaaagtcaaaatgggagtaagcagtaacatgagtacggcataaggatttgtacaa |
310 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30517590 |
ccctttgtgagaatgagaagtctatgacaaaagattagagctaacaaaagtcaaaatgggagtaagcagtaacatgagtacggcataaggatttgtacaa |
30517689 |
T |
|
| Q |
311 |
acaagcctatatatagtggttggttaacaacctcaaactagtgtcaaaataaaacaaaaataatactcaaatatatatctttagtgagtgaggttaactg |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30517690 |
acaagcctatatatagtggttggttaacaacctcaaactagtgtcaaaataaaacaaaaataatactcaaatatatatctatagtgagtgaggttaactg |
30517789 |
T |
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| Q |
411 |
agataactccaaaccatggattttgtcgtttagggcaaaaactgcaaaaaggcttatcgaaaaacttgtgtcttaattaatctttgatcaactcctt |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
30517790 |
agataactccaaaccatggattttgtcgtttagggcaaaaactgcaaaaaggcttatc-aaaaacttgtgtgttaattaatctttgatcaactcctt |
30517885 |
T |
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