View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19593_high_7 (Length: 350)
Name: NF19593_high_7
Description: NF19593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19593_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 13 - 333
Target Start/End: Original strand, 3433797 - 3434117
Alignment:
| Q |
13 |
aaaatcctaaagcattagggttatggtttctcttgcttatatgtttcattttctaattcaatataaaaattttgctcgagaggaatttaatgcgagactt |
112 |
Q |
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| T |
3433797 |
aaaaccctaaagcatcagggttatggtttctcttgcttatatgtttcattttctaattcaatgtgaaaattttgctcgagaggaattcaatacgagactt |
3433896 |
T |
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| Q |
113 |
ctgactcacattaactacaaaataatcaatataacatttttatgtagtaatctatatccaaattttgtttatcaattatcatgaggtcttacttgtaaca |
212 |
Q |
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|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433897 |
ctaactcacattaactacaaaataatcaatttaacatttttatgtagtaatctatatccaaattttgtttatcaattatcatgaggtcttacttgtaaca |
3433996 |
T |
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| Q |
213 |
caaagagggatgaccatgcaagagtagcaatgattagtaaaatggagcctaagaaccaattatccttgcttgaggaacttgaaatatttgcattgctatg |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
3433997 |
caaagagggatgaccatgcaagagtagcaatgattagtaaaatggagcctaagaaccaattatccttgcttgaggaacttgtaatatttgcattactatg |
3434096 |
T |
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| Q |
313 |
aggtatatatttagtccacat |
333 |
Q |
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||||||||||||||||||||| |
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| T |
3434097 |
aggtatatatttagtccacat |
3434117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 180 - 293
Target Start/End: Original strand, 3374932 - 3375045
Alignment:
| Q |
180 |
tttatcaattatcatgaggtcttacttgtaacacaaagagggatgaccatgcaagagtagcaatgattagtaaaatggagcctaagaaccaattatcctt |
279 |
Q |
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|||||||||||||||||| |||||||||||| |||||||| |||| |||||||| |||| |||||||||||||||||| ||||| |||||||||| ||| |
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| T |
3374932 |
tttatcaattatcatgagatcttacttgtaaaacaaagagtgatgcccatgcaatggtagaaatgattagtaaaatggaacctaaaaaccaattattctt |
3375031 |
T |
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| Q |
280 |
gcttgaggaacttg |
293 |
Q |
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||||||||| |||| |
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| T |
3375032 |
gcttgaggatcttg |
3375045 |
T |
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