View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19593_high_8 (Length: 342)
Name: NF19593_high_8
Description: NF19593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19593_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 4846901 - 4846629
Alignment:
| Q |
19 |
atatagctactgtcaatatttagatatggcagattcatatgacatagtgataatcgaaaatctcctatttaaaaaagaatcaaatcattctggatgtcta |
118 |
Q |
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| T |
4846901 |
atatagctactgtcaatatttagatatggcagattcatataacatagtgataatcaaaaatctcctatttaaaaaagaatcaaatcattctggatgtcta |
4846802 |
T |
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| Q |
119 |
tataa--------ccatttaccatatatcaatgctttttgatactattatcaattttccagatatcaactattatcaataatccatatataaatgtcttt |
210 |
Q |
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| T |
4846801 |
tataaaaccttcaccatttaccatatatcaatgctttttgctactattatcaattttccagatatcaactattatcaataatccatatataaatgtcttt |
4846702 |
T |
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| Q |
211 |
gtgtatatctattttgctttcaaatgattctttctatctgatttccattcatggcttaggtgatttttgcttt |
283 |
Q |
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| T |
4846701 |
gtgtatatctattttgctttcaaatgattctttctatctgatttccattcatggcttaggtgatttttgcttt |
4846629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 4846637 - 4846596
Alignment:
| Q |
291 |
ttttgctttaggtgacttctgattcttctattgtctcctatg |
332 |
Q |
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| T |
4846637 |
ttttgctttaggtgacttctgattcttctattgtctcttatg |
4846596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 200 - 332
Target Start/End: Original strand, 4079958 - 4080090
Alignment:
| Q |
200 |
taaatgtctttgtgtatatctattttgctttcaaatgattctttctatctgatttccattcatggcttaggtgatttttgcttttggttgcttttgcttt |
299 |
Q |
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| T |
4079958 |
taaatgtctttgtgtatatctactttgctttcaactgattctttctatctgatttccattcatggcttaggtgatttttgcttttggttgcttttgcttt |
4080057 |
T |
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| Q |
300 |
aggtgacttctgattcttctattgtctcctatg |
332 |
Q |
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| T |
4080058 |
aggtgacttatgattcttctattgtctcttatg |
4080090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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