View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19593_low_1 (Length: 660)
Name: NF19593_low_1
Description: NF19593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19593_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 257 - 645
Target Start/End: Complemental strand, 7401148 - 7400760
Alignment:
| Q |
257 |
cattagatatcttattttaaagaataaaaatatatttaagcctaaatgaaaattgaaggggtaggtttaattgattttgactatagattagaatatacct |
356 |
Q |
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| T |
7401148 |
cattagttatcttattttaaagaataaaaatatatttaagcctaaatgaaaattaaaggggtaggtttaattgattttgactatagattagaatatacct |
7401049 |
T |
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| Q |
357 |
gtattgatatattcaggagcagcatatccatgtgtacccatcacacgagttgtaatatgtgtttgatctttatctggtccatctattgctaaaccaaaat |
456 |
Q |
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| T |
7401048 |
gtattgatatattcaggagcagcatatccatgtgtacccatcacacgagttgtaatatgtgtttgatctttatctggtccatctattgctaaaccaaaat |
7400949 |
T |
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| Q |
457 |
ctgacaacttagcattgtaatcctgaaaaataattaatatatatgttcatgtcaatttctgttgattcaatttgctctacaaattttgataattaaaatg |
556 |
Q |
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| T |
7400948 |
ctgacaacttagcattgtaatcctgaaaaataattaatatatatgttcatgtcaatttctgttgattcaatttgctctacaaattttgataattaaaatg |
7400849 |
T |
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| Q |
557 |
catgatttgaatacttacagcatccaatagaatgtttgaggctttaacatctctatatataactggtttctcctcttcatgaagaaaag |
645 |
Q |
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| T |
7400848 |
catgatttgaatacttacagcatccaatagaatgtttgaggctttaacatctctatatataactggtttctcctcttcatgaagaaaag |
7400760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 7401212 - 7401325
Alignment:
| Q |
1 |
cacaattgtctggcttttatactcttatagtcaactttttgggatttggattgtgtgaggtgagtgtatgcagctagcagcgtctacatggtccgatcaa |
100 |
Q |
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| T |
7401212 |
cacaattgtctggcttttatactcttatagtcaactttt-gggatttggattgtgtgaggtgagtgtatgcagctagcagcgtctacatggtccgatcaa |
7401310 |
T |
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| Q |
101 |
gatcatatggtctaa |
115 |
Q |
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| T |
7401311 |
gatcatatggtctaa |
7401325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 7401369 - 7401406
Alignment:
| Q |
128 |
atgtttttaaaatcgaatatagggaacttgaaatatga |
165 |
Q |
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| T |
7401369 |
atgtttttaaaatcgaatatagggaacttgaaatatga |
7401406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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