View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19593_low_10 (Length: 315)
Name: NF19593_low_10
Description: NF19593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19593_low_10 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 227480 - 227191
Alignment:
| Q |
18 |
aaaactggaactttgaccacaaatcaaatggttgttgacaaaatatggatttgtgaacaaactaagccgattaaaagcggaaatcgtgatgattgaaatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||| |
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| T |
227480 |
aaaactggaactttgaccacaaatcaaatggttgttgacaaaatatggatttgtgaacaaactaagccgattaaaactggaaatcgtgatgatggtaatt |
227381 |
T |
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| Q |
118 |
tattgaagaactcaattttttaggacatatttgatctctttttgcagtcaatatttcagaatactgcctca------gtgaaaggtgaagatggaaagaa |
211 |
Q |
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|||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
227380 |
tattgaagaactcaatttccgaggagatattcgatctctttttgcagtcaatatttcagaatactgcctcagaggttgtgaaaggtgaagatggaaagaa |
227281 |
T |
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| Q |
212 |
caaggtgatgggaactccaacaaaatcagcattgcttggttttggtttgattttaagaggtgatactaagtttttcaatgataagtataa |
301 |
Q |
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|||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||| |||||||| |
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| T |
227280 |
caaggtgatgggaactccaacagaatcagcattgcttggatttggtttgattttaggaggtgatactaagttttacaatgacaagtataa |
227191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 14589898 - 14590187
Alignment:
| Q |
18 |
aaaactggaactttgaccacaaatcaaatggttgttgacaaaatatggatttgtgaacaaactaagccgattaaaagcggaaatcgtgatgattgaaatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||| |
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| T |
14589898 |
aaaactggaactttgaccacaaatcaaatggttgttgacaaaatatggatttgtgaacaaactaagccgattaaaactggaaatcgtgatgatggtaatt |
14589997 |
T |
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| Q |
118 |
tattgaagaactcaattttttaggacatatttgatctctttttgcagtcaatatttcagaatactgcctca------gtgaaaggtgaagatggaaagaa |
211 |
Q |
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|||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14589998 |
tattgaagaactcaatttccgaggagatattcgatctctttttgcagtcaatatttcagaatactgcctcagaggttgtgaaaggtgaagatggaaagaa |
14590097 |
T |
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| Q |
212 |
caaggtgatgggaactccaacaaaatcagcattgcttggttttggtttgattttaagaggtgatactaagtttttcaatgataagtataa |
301 |
Q |
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|||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||| |||||||| |
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| T |
14590098 |
caaggtgatgggaactccaacagaatcagcattgcttggatttggtttgattttaggaggtgatactaagttttacaatgacaagtataa |
14590187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 40199096 - 40199198
Alignment:
| Q |
18 |
aaaactggaactttgaccacaaatcaaatggttgttgacaaaatatggatttgtgaacaaactaagccgattaaaagcggaaatcgtgatgattgaaatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40199096 |
aaaactggaactttgaccacaaatcaaatggttgttgacaaaatatggatttgtgaacaaacgaagccgattaaaagcggaaatcgtgatgattgaaatt |
40199195 |
T |
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| Q |
118 |
tat |
120 |
Q |
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||| |
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| T |
40199196 |
tat |
40199198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 202 - 301
Target Start/End: Original strand, 40199197 - 40199296
Alignment:
| Q |
202 |
atggaaagaacaaggtgatgggaactccaacaaaatcagcattgcttggttttggtttgattttaagaggtgatactaagtttttcaatgataagtataa |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40199197 |
atggaaagaacaaggtgatgggaactccaacaaaatcagcattgcttggttttggtttgattttaagaggtgatactaagtttttcaatgataaatataa |
40199296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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