View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19593_low_16 (Length: 224)
Name: NF19593_low_16
Description: NF19593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19593_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 39736339 - 39736149
Alignment:
| Q |
17 |
cacagactaacctcataaagttcaatctcttcatcaagatcataaccagccaatttatttatccttgctaaaattgctgacgggttactataacagttaa |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39736339 |
cacaaactaacctcataaagttcaatctcttcatcaagatcataaccagccaatttatttatccttgctaaaattgctgacgggttactataacagttaa |
39736240 |
T |
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| Q |
117 |
caaagagccttccaacataactgccatagaaggaaaatacatttgatgtcaactcaggtccaccttgtacaccaacaaatattaaaatcag |
207 |
Q |
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| T |
39736239 |
caaagagccttccaacataactgccatagaaggaaaatacatttgaagtcaactcaggtccaccttgtacaccaacaaatattaaaatcag |
39736149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 25 - 206
Target Start/End: Original strand, 39847561 - 39847742
Alignment:
| Q |
25 |
aacctcataaagttcaatctcttcatcaagatcataaccagccaatttatttatccttgctaaaattgctgacgggttactataacagttaacaaagagc |
124 |
Q |
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||||||||||||||| || ||||||||| |||||||||||||||||||||||| | ||| ||| ||| |||| || |||| | ||||| ||||||||| |
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| T |
39847561 |
aacctcataaagttcgatatcttcatcaggatcataaccagccaatttatttaactttgttaagatttctgatggtttaccagtacagtcgacaaagagc |
39847660 |
T |
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| Q |
125 |
cttccaacataactgccatagaaggaaaatacatttgatgtcaactcaggtccaccttgtacaccaacaaatattaaaatca |
206 |
Q |
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| T |
39847661 |
cttccagcataactgccatagaagggaaatacatttgatgtcaactaaagtccaccttttaccgcaacatatgttaaaatca |
39847742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 203
Target Start/End: Original strand, 39910935 - 39911113
Alignment:
| Q |
25 |
aacctcataaagttcaatctcttcatcaagatcataaccagccaatttatttatccttgctaaaattgctgacgggttactataacagttaacaaagagc |
124 |
Q |
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|||||| || |||||||||||||||||| |||||||||||||||||||||||| | ||| ||| ||| ||| || ||| | |||||| |||| |||| |
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| T |
39910935 |
aacctcgtatagttcaatctcttcatcaggatcataaccagccaatttatttaactttgttaagatttgtgatggcttatcagtacagtttacaaggagc |
39911034 |
T |
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| Q |
125 |
cttccaacataactgccatagaaggaaaatacatttgatgtcaactcaggtccaccttgtacaccaacaaatattaaaa |
203 |
Q |
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||||||||||||||||||| |||| |||||||||||||||||||| ||||||| ||| ||| |||||| || |||||| |
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| T |
39911035 |
cttccaacataactgccatcaaagggaaatacatttgatgtcaactaaggtccatcttttaccccaacatatgttaaaa |
39911113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 39898168 - 39898332
Alignment:
| Q |
25 |
aacctcataaagttcaatctcttcatcaagatcataaccagccaatttatttatccttgctaaaattgctgacgggttactataacagttaacaaagagc |
124 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||| ||| ||| |||| || |||| |||||| ||||||||| |
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| T |
39898168 |
aacctcataaagttcaatctcttcatcaggatcaaaaccagccaaattatttaaacttgttaagatttctgatggtttaccggtacagttcacaaagagc |
39898267 |
T |
|
| Q |
125 |
cttccaacataactgccatagaaggaaaatacatttgatgtcaactcaggtccaccttgtacacc |
189 |
Q |
| |
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||||||||||||||||||| || | ||||||||||||| |||||| ||||||| ||||| |||| |
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| T |
39898268 |
cttccaacataactgccatcaaatggaaatacatttgatatcaactaaggtccatcttgtccacc |
39898332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 25 - 160
Target Start/End: Original strand, 39864586 - 39864720
Alignment:
| Q |
25 |
aacctcataaagttcaatctcttcatcaagatcataaccagccaatttatttatccttgctaaaattgctgacgggttactataacagttaacaaagagc |
124 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| || | ||| ||| |||| || ||| | |||||| ||||||| | |
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| T |
39864586 |
aacctcataaagttcaatctcttcatcaggatcataaccagccaatttatttaagctagttaagatttctgatggcttatcagtacagttcacaaagaac |
39864685 |
T |
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| Q |
125 |
cttccaacataactgccatagaaggaaaatacattt |
160 |
Q |
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|||||| ||||||||||||| |||| |||||||||| |
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| T |
39864686 |
cttccagcataactgccata-aagggaaatacattt |
39864720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 191
Target Start/End: Original strand, 37465990 - 37466156
Alignment:
| Q |
25 |
aacctcataaagttcaatctcttcatcaagatcataaccagccaatttatttatccttgctaaaattgctgacgggttactataacagttaacaaagagc |
124 |
Q |
| |
|
||||||||||||| |||||||||| ||| ||||||||||||||| |||||||| ||||||||| ||| |||| || |||| | || |||||||| |
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| T |
37465990 |
aacctcataaagtccaatctcttcttcaggatcataaccagccattttatttaaccttgctaagatttctgatggtttaccagtgttattcacaaagagt |
37466089 |
T |
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| Q |
125 |
cttccaacataactgccatagaaggaaaatacatttgatgtcaactcaggtccaccttgtacaccaa |
191 |
Q |
| |
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|| |||||| ||||||||| |||| ||| |||||||||||||||||||||||| ||| ||| |||| |
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| T |
37466090 |
ctgccaacaaaactgccatcaaagggaaaaacatttgatgtcaactcaggtccatcttctaccccaa |
37466156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 25 - 206
Target Start/End: Original strand, 39857390 - 39857575
Alignment:
| Q |
25 |
aacctcataaagttcaatctcttcatcaagatcataaccagccaatttatttatccttgctaaaattgctgacgggttactataacagttaacaaagagc |
124 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||| || || |||| || ||| | |||||| |||| ||| |
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| T |
39857390 |
aacctcataaagttcaatctcttcattaggatcataaccagccaatttatttaaccttgccaagatatctgatggcttatccttacagttcacaataagc |
39857489 |
T |
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| Q |
125 |
cttccaacataact----gccatagaaggaaaatacatttgatgtcaactcaggtccaccttgtacaccaacaaatattaaaatca |
206 |
Q |
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|||||||||||||| |||| |||| |||||||| ||||||||||| |||||||||| ||| ||||| || ||||||||| |
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| T |
39857490 |
cttccaacataactgccagccaccaaagggaaatacatatgatgtcaactatggtccaccttttacctcaacatatgttaaaatca |
39857575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 36059330 - 36059212
Alignment:
| Q |
25 |
aacctcataaagttcaatctcttcatcaagatcataaccagccaatttatttatccttgctaaaattgctgacgggttactataacagttaacaaagagc |
124 |
Q |
| |
|
||||||||||||| |||| ||||| ||| || |||||||||||| || ||||| ||||| ||| ||| |||| || || | | ||| || ||||||||| |
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| T |
36059330 |
aacctcataaagtacaatatcttcttcaggaacataaccagccatttcatttagccttgttaagatttctgatggcttgccagtacacttcacaaagagc |
36059231 |
T |
|
| Q |
125 |
cttccaacataactgccat |
143 |
Q |
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||||||||||| ||||||| |
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|
| T |
36059230 |
cttccaacatagctgccat |
36059212 |
T |
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