View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19593_low_2 (Length: 614)
Name: NF19593_low_2
Description: NF19593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19593_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 16 - 486
Target Start/End: Complemental strand, 8444840 - 8444370
Alignment:
| Q |
16 |
attctccaatgaaggtatctattaggtgccatgtcttaaatggtaaagacctcaccattgaggatgattttagagacattccatagacaaaatatattca |
115 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| || ||||||| ||||||||||||||||||||||| |
|
|
| T |
8444840 |
attcttcaatgaaggtatctattaagtgccatgtcttaaatggtaaagacctcaccattgaagataatcttagagatattccatagacaaaatatattca |
8444741 |
T |
|
| Q |
116 |
agtttctctttttcttaatcaatttcgtccataaaattataaaaagaaaaagttaatggcaatatattttaaatttcgatacttttaaaatggttgttta |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8444740 |
tgtttctctttttcttaatcaatttcgtccataaaattataaaaagaaaaagttaatggcaatatattttaaatttcgatacttttaaaatggttgttta |
8444641 |
T |
|
| Q |
216 |
ttcataaaaagtttatataagtgtgatattttttaaggttacattattttttcaacattgaagcaaaatatacaagttacttaaatatgatatcgtattg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
8444640 |
ttcataaaaagtttatataagtgtgatattttttaaggttacattattttttcaacattgaagcaaaatatacgagttatttaaatatgatatcgtattg |
8444541 |
T |
|
| Q |
316 |
tgaaaaccaatagtagttatgaaactcattgtgagttccttacctgttgaataaactatctttcatatttacatgtggattgactctaaacattgctaat |
415 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8444540 |
tgaaaaccactagtagttatgaaactcattgtgagttccttacctgttgaataaactatctttcatatttacatgtggattgactctaaacattgctaat |
8444441 |
T |
|
| Q |
416 |
aatgaaaggtcctttccattttccaaatttaggatttttaactccaaactgtaagattgatacctaacata |
486 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8444440 |
aatgaaaggtcctttccattttccaaatttaggatttttaactccaaactgtaagattgatacctaacata |
8444370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 377010 - 376949
Alignment:
| Q |
22 |
caatgaaggtatctattaggtgccatgtcttaaatggtaaagacctcaccattgaggatgat |
83 |
Q |
| |
|
||||||||||| ||||||| | | | |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
377010 |
caatgaaggtacctattagatactaggtcttaaatggtgaagacctcaccattgaggatgat |
376949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 53143435 - 53143392
Alignment:
| Q |
38 |
taggtgccatgtcttaaatggtaaagacctcaccattgaggatg |
81 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
53143435 |
taggtaccatgtcttaaatggttaagacctcaccattgtggatg |
53143392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 7885873 - 7885807
Alignment:
| Q |
15 |
tattctccaatgaaggtatctattaggtgccatgtcttaaatggtaaagacctcaccattgaggatg |
81 |
Q |
| |
|
||||| |||||| ||||| ||||||||| | |||||||||||| ||||||||||||||| ||||| |
|
|
| T |
7885873 |
tattcgccaatggaggtacctattaggtatcgggtcttaaatggtgaagacctcaccattggggatg |
7885807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 45707538 - 45707488
Alignment:
| Q |
31 |
tatctattaggtgccatgtcttaaatggtaaagacctcaccattgaggatg |
81 |
Q |
| |
|
|||||||||||| || ||||||||||| ||||||||||||||||||||| |
|
|
| T |
45707538 |
tatctattaggtaccggatcttaaatggtgaagacctcaccattgaggatg |
45707488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 8433952 - 8434004
Alignment:
| Q |
29 |
ggtatctattaggtgccatgtcttaaatggtaaagacctcaccattgaggatg |
81 |
Q |
| |
|
|||| ||||||||| ||| |||||||||||| ||||||||||||||| ||||| |
|
|
| T |
8433952 |
ggtacctattaggtaccaggtcttaaatggtgaagacctcaccattgtggatg |
8434004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 606621 - 606672
Alignment:
| Q |
30 |
gtatctattaggtgccatgtcttaaatggtaaagacctcaccattgaggatg |
81 |
Q |
| |
|
||||||||||||| | | |||||||||||| ||||||||||||||| ||||| |
|
|
| T |
606621 |
gtatctattaggtactaggtcttaaatggtgaagacctcaccattgtggatg |
606672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 25479624 - 25479563
Alignment:
| Q |
20 |
tccaatgaaggtatctattaggtgccatgtcttaaatggtaaagacctcaccattgaggatg |
81 |
Q |
| |
|
|||||||||| || ||||||||| ||| ||||||||||| |||||||||| ||||| |||| |
|
|
| T |
25479624 |
tccaatgaagatacctattaggtaccaaatcttaaatggtgaagacctcactattgaagatg |
25479563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 37247409 - 37247461
Alignment:
| Q |
29 |
ggtatctattaggtgccatgtcttaaatggtaaagacctcaccattgaggatg |
81 |
Q |
| |
|
|||| ||||||||| ||| ||||||||||| ||||||||||||||| ||||| |
|
|
| T |
37247409 |
ggtacctattaggtaccagatcttaaatggtgaagacctcaccattgtggatg |
37247461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 44104038 - 44103986
Alignment:
| Q |
29 |
ggtatctattaggtgccatgtcttaaatggtaaagacctcaccattgaggatg |
81 |
Q |
| |
|
|||| ||||||||| ||| |||||||||||| |||||||||||| || ||||| |
|
|
| T |
44104038 |
ggtacctattaggtaccaagtcttaaatggtgaagacctcaccaatgtggatg |
44103986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University