View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19593_low_5 (Length: 505)
Name: NF19593_low_5
Description: NF19593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19593_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Original strand, 31560334 - 31560822
Alignment:
| Q |
1 |
ataactaggagtatattcatgcaaaagcaaatcaaataaaatggtgactttcatgaggcccagttttggaaaatataaatatagatatgccaggtcagaa |
100 |
Q |
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| T |
31560334 |
ataactaggagtatattcatgcaaaagcaaatcaaataaaatggtgactttcatgaggcccagttttggaaaatataaatatagatatgccaggtcagaa |
31560433 |
T |
|
| Q |
101 |
tgagaaaacagaactcaaccaacagaaaaagctgggatgatattgtagtcctaccttatgtgcatattccacgtaagtttcatgaaatagcttgaaatac |
200 |
Q |
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| T |
31560434 |
tgagaaaacagaactcaaccaacagaaaaagctgggatgatattgtagtcctaccttatgtgcatattccacgtaagtttcatgaaatagcttgaaatac |
31560533 |
T |
|
| Q |
201 |
tgatgcaatgttgaccggccttcaattgaatcagctgcaactgcacgtaaactttgtgaggcccaaggcacaagtacctccttgggcccactaagcagtt |
300 |
Q |
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| T |
31560534 |
tgatgcaatgttgaccggccttcaattgaatcagctgcaactgcacgtaaactttgagaggcccaaggcacaagtacctccttgggcccactaagcagtt |
31560633 |
T |
|
| Q |
301 |
ctttgctaattattggttgtatatctctctcatttgattgcccaactgattgaatgtttttcttttccatatcaatgcttaatggaagcaagaggtccca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31560634 |
ctttgctaattattggttgtatatctctctcatttgattgcccaactgattgaatgtttttcttttccatatcaatgcttaatggaagcaagaggtccca |
31560733 |
T |
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| Q |
401 |
agttttcatctcaagcacaacacattcttgagaaagtgtaacagctacaatccaggaatatccaaatgaatctaacaatgacacaaaac |
489 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31560734 |
agttttcatctcaagcacaacacattcttgagaaagtgtaacagctacaatccaggaatatccaaatgaatctgacaatgacacaaaac |
31560822 |
T |
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